Gene detail information of Glyur001540s00033494 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57830.1 | 5.00E-33 | Protein of unknown function, DUF593 |
| NR | XP_006587118.1 | 4.34E-142 | PREDICTED: uncharacterized protein LOC100803934 [Glycine max] |
| trEMBL | tr|K7LCM0|K7LCM0_SOYBN | 2.00E-145 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G11471.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01540 | 51998 | 55162 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001540s00033494.1 | PF04576.10 | Zein-binding | 78 | 170 | 9.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.632 |
| SRR1783600 | control | 3.632 |
| SRR1783602 | moderate drought stress | 4.421 |
| SRR1811619 | moderate drought stress | 4.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.845 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.665 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.347 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.112 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.322 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.338 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.602 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.042 |
| SRR2868004 | Drought Stress (root) | 11.254 |
| SRR2967015 | Control (root) | 9.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.436 |
| SRR9715740 | Leaf | 1.848 |
| SRR9715741 | Leaf | 1.121 |
| SRR9715739 | Root | 0.889 |
| SRR9715742 | Root | 4.138 |
| SRR9715743 | Root | 3.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.078 |
| SRR8749028 | MeJA induced 9h | 18.531 |
| SRR8749029 | MeJA induced 9h | 9.986 |
| SRR8749030 | Uninduced | 39.443 |
| SRR8749031 | Uninduced | 5.357 |
| SRR8749032 | Uninduced | 3.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.608 |
| SRR8400027 | Control - Root | 4.698 |