Gene detail information of Glyur001537s00028903 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31175.1 | 5.00E-24 | |
| NR | XP_004487808.1 | 1.65E-40 | PREDICTED: uncharacterized protein LOC101501103 [Cicer arietinum] |
| trEMBL | tr|A0A072V6A9|A0A072V6A9_MEDTR | 8.00E-41 | Cytochrome C oxidase biogenesis Cmc1-like protein {ECO:0000313|EMBL:KEH37166.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01537 | 17986 | 18261 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001537s00028903.1 | PF08583.5 | Cmc1 | 3 | 47 | 8.00E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.625 |
| SRR1783600 | control | 5.064 |
| SRR1783602 | moderate drought stress | 9.517 |
| SRR1811619 | moderate drought stress | 7.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.389 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.186 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.138 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.030 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.188 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.735 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.760 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.847 |
| SRR2868004 | Drought Stress (root) | 6.817 |
| SRR2967015 | Control (root) | 5.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.657 |
| SRR9715740 | Leaf | 2.887 |
| SRR9715741 | Leaf | 2.449 |
| SRR9715739 | Root | 3.511 |
| SRR9715742 | Root | 2.437 |
| SRR9715743 | Root | 2.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.433 |
| SRR8749028 | MeJA induced 9h | 18.973 |
| SRR8749029 | MeJA induced 9h | 15.381 |
| SRR8749030 | Uninduced | 15.726 |
| SRR8749031 | Uninduced | 5.256 |
| SRR8749032 | Uninduced | 30.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.869 |
| SRR8400027 | Control - Root | 5.896 |