Gene detail information of Glyur001537s00028898 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003594836.1 | 7.02E-68 | Disease resistance response protein Pi49 [Medicago truncatula] |
| Swissprot | tr|P93333|PR101_MEDTR | 5.00E-66 | Class-10 pathogenesis-related protein 1 |
| trEMBL | tr|G7IMZ2|G7IMZ2_MEDTR | 3.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:AFK39187.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01537 | 1558 | 2184 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001537s00028898.1 | PF00407.14 | Bet_v_1 | 1 | 157 | 1.80E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.559 |
| SRR1783600 | control | 1.343 |
| SRR1783602 | moderate drought stress | 1.160 |
| SRR1811619 | moderate drought stress | 1.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.221 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.211 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.217 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.207 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.364 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.151 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.026 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.402 |
| SRR2868004 | Drought Stress (root) | 49.705 |
| SRR2967015 | Control (root) | 16.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.154 |
| SRR9715740 | Leaf | 0.411 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 2.670 |
| SRR9715742 | Root | 1.257 |
| SRR9715743 | Root | 1.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.104 |
| SRR8749028 | MeJA induced 9h | 3.230 |
| SRR8749029 | MeJA induced 9h | 3.897 |
| SRR8749030 | Uninduced | 4.663 |
| SRR8749031 | Uninduced | 2.229 |
| SRR8749032 | Uninduced | 2.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.991 |
| SRR8400027 | Control - Root | 1.602 |