Gene detail

Gene detail information of Glyur001536s00030535

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G48920.1	3.00E-20	nucleolin like 1
NR	XP_006605441.1	3.27E-43	PREDICTED: nucleolin 2-like isoform X22 [Glycine max]
COG	YP_010476.1	3.00E-08	RNA-binding protein [Desulfovibrio vulgaris str. Hildenborough]
Swissprot	tr\|Q9FVQ1\|NUCL1_ARATH	8.00E-22	Nucleolin 1
trEMBL	tr\|K7N0K3\|K7N0K3_SOYBN	7.00E-47	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G00646.1}

Sequence

Transcript Sequence

>Glyur001536s00030535.1
AGATTTCCAATTTCCAGCTTGCACACAAGCGCAGTCAACCGGAGAAGGAAAACGCACTGGGGGAAAGCATTGGCGCGCGTTGCTCGTCTCGTCGTCTTGTCCTATCTGGAAGTCCAAAACCCTAACGGCTAACTCAACCCCTTTAAACTAAAACCGTCTCTCTTCTCTCTCTCATTCGATTCCCCGAATAAAAATCCGCTATGGACAATGAATCAGAACCCGAAGCCGGTGCCACTGCCACTGCCACTGCACTTTCACCTCCCAGAATGGGCAAGAGGGAGGGTGAGGATGAATATGAGAAGCAGGTGATTGCAAAGAAGCAGAAGATAGATGAGGTTGCTGAAGAGCAAAAGGATACGGAGCATAGTAATTCAGATTATTCTGAACACGATAAGAAACTTGAAGCTGGAAAAAGTGAGCCTGCTACAAGTTGTGGTTCTTCGGAATCATTGGATGATGGTAGCTTGGAGTCTGGTTCTGACAGAAAGTCTGTTGAGGATAATGGGATGATGGATATTGATGAGGGTGATAGTTTTGAAGAAAGTGATGAAGAGGCACAAAAGAAAAAGATGGAAGTTTTGATGAATGCTGCATCTGATGCTGAAAAACTTGATTTAAAAACTTTTAAAATGAATACTTCTAGTGATACTGATAGTTTAGATAATGATGATGATGATAAAGACGATGATAATCATGATAGCTCCGATGACATTGAAAATCTATATATGGTTAAGGATATTGAGATGTTTGATGCTTCCCCCATTGAAAAGAAAGTTCCTAAAGCCCCAGCCACTCAGAAAGCATCAAAGACAATATATGTTAGAAACTTGTCATACAGTGTGGAACGGGCTGATATGGAAGATCTCTTCAAAGATTGTGGTGAAGTTGTTGATGTTCGTCTCCATACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGGAACAGCAGAAGCAGCACAAAAATGTTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01536	9397	12084	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001536s00030535.1	PF00076.17	RRM_1	205	259	4.50E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.327
SRR1783600	control	6.208
SRR1783602	moderate drought stress	9.852
SRR1811619	moderate drought stress	9.773

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.526
DRR006520	Root Summer glycyrrhizin high producing strain	4.488
DRR006521	Root Winter glycyrrhizin high producing strain	4.759
DRR006522	Root Winter glycyrrhizin high producing strain	4.556
DRR006523	Root Summer glycyrrhizin low producing strain	4.775
DRR006524	Root Summer glycyrrhizin low producing strain	4.754
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.232
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.361

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.127
SRR2868004	Drought Stress (root)	7.446
SRR2967015	Control (root)	10.525

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.189
SRR9715740	Leaf	2.907
SRR9715741	Leaf	3.511
SRR9715739	Root	0.462
SRR9715742	Root	4.305
SRR9715743	Root	3.072

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.996
SRR8749028	MeJA induced 9h	15.548
SRR8749029	MeJA induced 9h	3.913
SRR8749030	Uninduced	3.257
SRR8749031	Uninduced	1.794
SRR8749032	Uninduced	1.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.491
SRR8400027	Control - Root	8.664