Gene detail

Gene detail information of Glyur001534s00033650

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39955.1	6.00E-112	alpha/beta-Hydrolases superfamily protein
NR	XP_003552813.1	8.83E-179	PREDICTED: monoacylglycerol lipase ABHD6 [Glycine max]
COG	YP_132656.1	3.00E-34	hypothetical protein PBPRB0984 [Photobacterium profundum SS9]
trEMBL	tr\|G7J3Q3\|G7J3Q3_MEDTR	1.00E-178	Alpha/beta fold hydrolase {ECO:0000313\|EMBL:AES72188.1}

Sequence

Transcript Sequence

>Glyur001534s00033650.1
TGCTTATAAAAAATTGATGTGATAAATAAATAATTGCACAGAAACAGGGATAGAGAAAAAGAAAAATAATAATTGGGTAGTGAGCTTCTTCTGCCATCGCAATCTTCCACTCTGCAACAACTATAAGCTTCACCACTTGGTCTTTTCATTCATCAGAAACCCACCATTCCATTTTCTTTCACCAAGAATTTGCTCCACTCCAACTCCAACACACGAAAAGGAGGAAAGAAAAAAAGAAGAAGAAGAAGCTGATCAATATGGGTAGTAGTAGCAGATGTTTGAGCTTCACCGCCTGGCGCAACCGGTGGTTCCGCCACTCCTTCTCCAACGCCGGCCTCAAATCAACCACCACCGATCTCGGCGACGGAACCGTAATGCATTGCTGGGTCCCCAAAGCTAAGGGTTCCAATTCCAACCCCAAGCCTTCTCTCGTTCTCCTCCACGGAATCGGAGCCAACGCAATGTGGCAGTGGGGCCCATTCATCTCCTCACTCACGCGCCACTTCAGCGTNTACGTTCCCGACTTGGTCTTCTTCGGTGACTCCCACACGACCCGACCCGAAAGATCCGAACAGTTCCAAGCAAAGTGCGTCGTTGCCCTGCTGAAGGCCCACGGGGTTAACGGGTNGGCTAACGTGGTCGGGTTGAGCTATGGCGGGTTCGTGGCGTACAGCATGGCGGCGATGTTCCCGCTGAGCGTGGGGAAGGTTGTGCTGTGTTGTGCTGGGGTGTGTTTGGAAGAGAAGGACATGGATGATGGGATGTTTCAGGTGAAAAGTGTTGATGAGGCTGTGAGTGTGTTGCTTCCTCAGACGCCGGAAATGATTAGGCAATTGGTGCGGCTCACTTTCTTCAAGCCCATCAAACTCTTGCCTACTTGTTTCCTCAATGATTTCATCGATGTGATGTGTACGGAATACCGCCAGGAGAGGAAAGAATTAATCCAAGCACTGCATAAAGAAAGAAAATTGTCTAATCTTCCTAAGATAACCCAGCCAATGCTAATTATCTGGGGAGAACAGGACCGGGTATTCCCAATGGAATTAGCTCACAGACTGAAACGGCATGTGGGAGAGAAGGCACAACTAGTGGCCATTGAGAATGCAGGGCATGCAATCAACGTAGAGAAGCCCAAGGAGTTGTACAAGAATTTAAAATCCTTCCTCATTGATCCCTTGACTCCATCTAAACATGAAAACCACAGCAATTATCACAAGGTGGACCCTGAGAATTAGAAAGAACCTTTCAGCATTATGGATATGTTGCATGTTTCTCTATTATTTCATCCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01534	62269	65151	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001534s00033650.1	PF12697.2	Abhydrolase_6	58	295	8.50E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	56.709
SRR1783600	control	56.883
SRR1783602	moderate drought stress	32.604
SRR1811619	moderate drought stress	32.682

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.079
DRR006520	Root Summer glycyrrhizin high producing strain	16.715
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	10.092
DRR006524	Root Summer glycyrrhizin low producing strain	10.353
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.004
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.008

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.537
SRR2868004	Drought Stress (root)	24.770
SRR2967015	Control (root)	26.136

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.537
SRR9715740	Leaf	0.624
SRR9715741	Leaf	2.410
SRR9715739	Root	14.918
SRR9715742	Root	17.407
SRR9715743	Root	16.423

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.896
SRR8749028	MeJA induced 9h	7.294
SRR8749029	MeJA induced 9h	5.508
SRR8749030	Uninduced	0.541
SRR8749031	Uninduced	0.089
SRR8749032	Uninduced	0.389

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.816
SRR8400027	Control - Root	44.836