Gene detail information of Glyur001534s00033642 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G34370.2 | 2.00E-48 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_003552051.1 | 4.29E-99 | PREDICTED: zinc finger protein STOP1 homolog [Glycine max] |
| Swissprot | tr|Q9C8N5|STOP1_ARATH | 2.00E-67 | Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 |
| trEMBL | tr|I1MYR4|I1MYR4_SOYBN | 2.00E-99 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G02010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01534 | 21316 | 22263 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001534s00033642.1 | PF00096.21 | zf-C2H2 | 107 | 128 | 0.0001 |
| Glyur001534s00033642.1 | PF00096.21 | zf-C2H2 | 197 | 220 | 0.024 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.120 |
| SRR1783600 | control | 2.164 |
| SRR1783602 | moderate drought stress | 1.895 |
| SRR1811619 | moderate drought stress | 1.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.417 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.152 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.061 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.833 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.963 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.766 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.709 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.272 |
| SRR2868004 | Drought Stress (root) | 5.704 |
| SRR2967015 | Control (root) | 5.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.033 |
| SRR9715740 | Leaf | 3.335 |
| SRR9715741 | Leaf | 3.290 |
| SRR9715739 | Root | 8.113 |
| SRR9715742 | Root | 4.631 |
| SRR9715743 | Root | 5.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.011 |
| SRR8749028 | MeJA induced 9h | 1.000 |
| SRR8749029 | MeJA induced 9h | 1.915 |
| SRR8749030 | Uninduced | 1.166 |
| SRR8749031 | Uninduced | 0.209 |
| SRR8749032 | Uninduced | 0.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.129 |
| SRR8400027 | Control - Root | 3.044 |