Gene detail

Gene detail information of Glyur001534s00033639.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34370.2	2.00E-49	C2H2 and C2HC zinc fingers superfamily protein
NR	XP_004502417.1	2.31E-139	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9C8N5\|STOP1_ARATH	2.00E-69	Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
trEMBL	tr\|I1MYR4\|I1MYR4_SOYBN	4.00E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G02010.1}

Sequence

Transcript Sequence

>Glyur001534s00033639.1
ATGTCCAAACCGAACCCTGATTCACATGACGCGACCCGAATGCCCAACCCGCGGGATTACCCGAATAGCACAGCGGACCCTCAGGTTCCGCTTCGGAACCTATCCCTGGTTCGGACGAGAATAGATTCTCTACGGACCTTCCTATCCCAATCCATCAACACCAACGCTCCCCTCACCAACGACCAAACCACCGTCGTCTCCAACCATATCGCCTCCGCCATCCACCACATCATAGTCAACGGCTCCGCCCTCGTTTCCAATTACTCTCACAATCTCACCCTCGCCGCCGCCACGCCGCCGGAGAAACCCTCCGCCACCGATTCGAAAATCGCCGACGACGGCGACGATTGCAAAATCGCGGAGCTCGACGCGGTGGAACTTCTCGCCGAGCACATCCACTTCTGCGAGATTTGCGGTAAAGGGTTCAGGCGAGACGCGAACCTCCGGATGCACATGCGAGCCCACGGGAACCAGTTCAAGACGCCGGAAGCGCTCGCCAAGCCTCCGCCGGAGAATTGCGCCGCCGCCGCCTCACGCCGGAAGGCCACGACGCGGTTCTCGTGCCCGTTCGAGGGGTGTAGCAGGAACAGGAATCACGCGAAGTTCATGTCGCTGAAGTCGGTGGTGTGCGTGAGGAACCATTTCAAGAGGAGCCACTGCCCGAAGATGTACACGTGCAACACGTGCCACAGGAAGAGCTTCTCGGTGCTCTCTGACTTGAAGAGCCACATGAAGCACTGTGGTGGTGAGTCTGAGTCAAAGTCGTCGAAATGGAAGTGCTCGTGTGGGACCACGTTTTCCAGGAAGGCCAAGTTGTTCGGACACGTGGCACTTTTTGAGGGCCACATGCCTGCTCTTGCCTTGGACGAAAAAGGGAAACAGTTACTGGTGGTGGAGGAAAGTGAGGAGGATCCTAAGGTGGTGATGACGGAAGGTGAATTGGGTAATTGTTTTCTGGATGATGATGGGTTGTTGCCGGAGGAGTTCTTTGATGATTTTGAGTCCATTGATAACTATAGTTTCACATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01534	608	1636	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001534s00033639.1	PF00096.21	zf-C2H2	134	155	0.00011
Glyur001534s00033639.1	PF00096.21	zf-C2H2	224	247	0.027

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.994
SRR1783600	control	5.920
SRR1783602	moderate drought stress	4.753
SRR1811619	moderate drought stress	5.107

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.062
DRR006520	Root Summer glycyrrhizin high producing strain	6.346
DRR006521	Root Winter glycyrrhizin high producing strain	1.800
DRR006522	Root Winter glycyrrhizin high producing strain	1.886
DRR006523	Root Summer glycyrrhizin low producing strain	5.698
DRR006524	Root Summer glycyrrhizin low producing strain	5.509
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.296
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.104

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.216
SRR2868004	Drought Stress (root)	11.688
SRR2967015	Control (root)	10.946

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.129
SRR9715740	Leaf	6.551
SRR9715741	Leaf	7.648
SRR9715739	Root	17.821
SRR9715742	Root	10.917
SRR9715743	Root	11.196

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.695
SRR8749028	MeJA induced 9h	1.702
SRR8749029	MeJA induced 9h	1.993
SRR8749030	Uninduced	1.372
SRR8749031	Uninduced	0.323
SRR8749032	Uninduced	0.794

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.731
SRR8400027	Control - Root	6.028