Gene detail

Gene detail information of Glyur001533s00032757

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G59720.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_007153862.1	hypothetical protein PHAVU_003G071000g [Phaseolus vulgaris]
Swissprot	tr\|Q0WQW5\|PPR85_ARATH	Pentatricopeptide repeat-containing protein At1g59720, mitochondrial (Precursor)
trEMBL	tr\|V7CAB2\|V7CAB2_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW25856.1}

Sequence

Transcript Sequence

>Glyur001533s00032757.1
ATGGCTTTGGCCATGGCAACAAGCCCAACTCCTCTGCATTGCTCAACAACCACCAACACCAACAACCACAACANCATCAACCTCACACGCCTTATCCATTTGTTAAACGAATCCAATGGCAATATGTCTCACCTCAAGCAAATACATGCTCAAATGCTTCGCACCATTGACGCCAACAACAACCACCCACAAGCCCTCTTTCTGTACAGCAGAATCCTCCATCACTCCTCTTTATCTGATCTCAACTACGCTACACGGGTATTCCATCACTTTGGGAACCCCAATTCCTTCATGTGGAACACTCTCATTCGAGCACACGCAAGAAGCACAAGTCACAAAGACAAAGCTATGGTGCTTTACGAAGCAATGGTAGAAGAAAGTGCAGTACTTCCTGATAACCACACTTTCCCATTTGTTCTAAAGGCTTGTGCTTACTTGTTCTCTCTTTGTGAAGGGAAACAGGTTCATGCCCATGTTTTGAAACTTGGGTTTGAGTCAGATACTCATATTTGTAACAGCTTGATTCATTTCTATGCTTCATGTGGGTGTTTGGACATTGCACAGAAGGTATTTGAGAAAATGTCTGAGAGGAGTGAGGTTTCGTGGAATGTCATGATCGATTCTTATACAAGGGTTGGTGAGTTTGACACTGCCTTGAAGGTGTTTGGTGAGATGCAGAAGGTGCATGAGCCTGATGGGTACACAATGCAGAGTGTTATTACTGCTTGTGCTGGTTTGGGTGCTCTTTCATTGGGTATGTGGGCCCATGCTTATGTTTTGAGAAAGCGTGGTGACAAGAATGTGGCTGGTGGTGATGTTTTGGTCAATACTTGTTTGGTGGATATGTATTGCAAATGTGGGTCCTTGGAAATTGCTCAACAGGTGTTTGAAAGCATGCCTTATAGAGATGTGAATTCATGGAACTCAATCATCTTGGGTTTTGCAATGCATGGCAAGGCTGAGGAAGCATTGGAGTACTATAATCGTTTGGTGAAGGTGGAGAAACTTGTCCCCAATTCCATCACTTTTGTTGGTGTATTGAGTGCATGTAACCACAGGGGGATGGTCAATGAGGGACTTGTGTATTTTGACATGATGACTAAGGAGTACAATGTTGAGCCAAGGTTGGAGCATTATGGATGCCTTGTTGATCTCTTTGCTCGAGCCGGGCGAATACAAGAGGCTCTAAACCTGGTTTCAGAAATGCCCATTAAACCAGATGCTGTAATCTGGAGGAGTCTTTTGGATGCTTGTTGCAAGCAGCAACAGAATGCAAGTGTTGTTGAGCTGAGTGAAGAATTGGCAAAGCAAGTGTTTGAGTCAGAGAANGGGAGTAGTGTTTGTGGTGGTGGTGGTGCTTATGTGCTTCTGTCAAAAGTATATGCTTCAGCTAACAAGTGGAATGATGTAGGATTGGTTAGAAAGCTAATGGATGATCAAGGTGTGACTAAAGAGCCTGGCTGTAGTTTAATAGAGGTAGATGGTGTTGCTCATGAGTTTTTTGCTGGAGACACCACTCACCCACAGAGTAGAGATATATACAAGTTTATGAGTGAGATTGAGGAGAAGCTGGAATCAATAGGGTATTTACCTGATTGCTCAGGGGCACCTTTGATTGATGAGACTAGTGAAGGGAAAAAGAATACTATGAGGTTGCATAGTGAGAGATTGGCCATTGCTTTTGGGCTCTTGAACTCAAGACCAGGCATGCCAATAAGAGTGTTTAAGAATCTTAGAGTGTGTAGTGATTGCCACAAGGTTACTAAATTAATCTCCAGAATTTACAATGTGGAGATCATTGTGAGAGATCGTGTTCGGTTCCATCACTTTAAAGATGGGACCTGTTCTTGTATGGACTACTGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01533	49477	51342	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001533s00032757.1	PF13812.1	PPR_3	98	126	0.2
Glyur001533s00032757.1	PF01535.15	PPR	171	197	0.0014
Glyur001533s00032757.1	PF13041.1	PPR_2	199	244	1.30E-09
Glyur001533s00032757.1	PF01535.15	PPR	277	301	0.014
Glyur001533s00032757.1	PF01535.15	PPR	306	331	0.00036
Glyur001533s00032757.1	PF13812.1	PPR_3	377	402	0.0027
Glyur001533s00032757.1	PF14432.1	DYW_deaminase	498	611	5.90E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.841
SRR1783600	control	0.840
SRR1783602	moderate drought stress	0.644
SRR1811619	moderate drought stress	0.615

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.028
DRR006520	Root Summer glycyrrhizin high producing strain	2.164
DRR006521	Root Winter glycyrrhizin high producing strain	0.791
DRR006522	Root Winter glycyrrhizin high producing strain	0.797
DRR006523	Root Summer glycyrrhizin low producing strain	1.597
DRR006524	Root Summer glycyrrhizin low producing strain	1.674
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.644
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.439

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.763
SRR2868004	Drought Stress (root)	1.232
SRR2967015	Control (root)	1.128

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.748
SRR9715740	Leaf	5.781
SRR9715741	Leaf	3.938
SRR9715739	Root	1.366
SRR9715742	Root	0.754
SRR9715743	Root	1.567

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.481
SRR8749028	MeJA induced 9h	2.008
SRR8749029	MeJA induced 9h	1.580
SRR8749030	Uninduced	0.474
SRR8749031	Uninduced	0.593
SRR8749032	Uninduced	0.811

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.059
SRR8400027	Control - Root	0.906