Gene detail information of Glyur001533s00032756 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27100.1 | 1.00E-135 | Actin cross-linking protein |
| NR | AET03034.2 | 0 | actin cross-linking protein [Medicago truncatula] |
| trEMBL | tr|G7LDS6|G7LDS6_MEDTR | 0 | Actin cross-linking protein {ECO:0000313|EMBL:AET03034.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01533 | 35297 | 42888 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001533s00032756.1 | PF04601.8 | DUF569 | 1 | 146 | 4.40E-54 |
| Glyur001533s00032756.1 | PF04601.8 | DUF569 | 222 | 363 | 1.10E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.738 |
| SRR1783600 | control | 7.738 |
| SRR1783602 | moderate drought stress | 4.053 |
| SRR1811619 | moderate drought stress | 3.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.401 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.674 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.784 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.582 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 58.579 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 59.076 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.219 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.140 |
| SRR2868004 | Drought Stress (root) | 37.838 |
| SRR2967015 | Control (root) | 33.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.123 |
| SRR9715740 | Leaf | 13.869 |
| SRR9715741 | Leaf | 47.854 |
| SRR9715739 | Root | 20.559 |
| SRR9715742 | Root | 82.337 |
| SRR9715743 | Root | 68.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 52.937 |
| SRR8749028 | MeJA induced 9h | 65.222 |
| SRR8749029 | MeJA induced 9h | 55.710 |
| SRR8749030 | Uninduced | 50.807 |
| SRR8749031 | Uninduced | 27.579 |
| SRR8749032 | Uninduced | 54.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.491 |
| SRR8400027 | Control - Root | 25.288 |