Gene detail

Gene detail information of Glyur001531s00034067

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G55740.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004507624.1	PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9FM64\|PP431_ARATH	Pentatricopeptide repeat-containing protein At5g55740, chloroplastic (Precursor)
trEMBL	tr\|G7LH09\|G7LH09_MEDTR	Chlororespiratory reduction protein, putative {ECO:0000313\|EMBL:AET03258.2}

Sequence

Transcript Sequence

>Glyur001531s00034067.1
ATGCATGGCTTGGCTTGTCTTCCCATCACCACAACCAACACAATCCCACAACAACTTACCCAACCCAAACCACCCCAAACCAACCCAAACTCACCCAACCTCACACCAAACCAGTTCCCAAAAAAACTTCCAAACACCGCAATCCATCATTCCAACATCTCTGTGCTCTGCAAAGAAGGCCGAATCCTCGAAGCCGTAAAGTCACTCTCCGAGGGATGCGTCCACGTAGGACCCGACATTTACGGAGAACTCCTACAGGGATGCGTTTACGAAAGGGCACTCGGGTTGGGACTCCAAATCCACGGCCACGTCATNAAAAAGGGCCCCACCTATGCACGAAACGAGTTCGTCGAGTCGAAGCTGGTGATCCTCTACGCGAAATGCGGCGTCTCGGACGCCGCGACTCGCCTCTTCCGCAGCGCTCGGAAACAGAATCTCTTCTCTTGGGCCGCCATCGTGGGCCTGCACGCCCGAATGGGCCGGTCTGAGGAAGCGCTATTGGGCTACGTCGAGATGCAGGAGAACGGGTTTGGGCCCGATAACTTCGTCGTCCCGATCGCTTTGAAGGCCTGTGGGGCCCTCCAATGGATTCGGTTCGGGAAAGGTGTTCACGGCTACGCCGTGAAAATGATGANCTTCGATGGCTGTGTTTATGTTGCGACTAGTCTCGTTGATATGTATGGGAAGTGTGGGGTTTTGGAGGATGCGAAGAAGGTGTTCGATGAAATCCCTGAGAAGAAAAGGAACGTCGTTGCTTGGAACTCAATGATTGCGGTTTATGCACAAAACGGAATGAACGAGGAAGCAGTGAAGTTATTTAAAAAGATGAGACTCCATGGTAGTAGTGTTGAACCGAATCCTGTTACTTTGTCGGGTTTTCTTTCAGCGTGTGCTAATTTGGAGGCAGTGATTGAAGGAAGACAAGGGCATGCTTTTGCTGTTCTATTGGGGTTTGATTTAGGTAACAACAACATTTTGGGTAGCTCTATTATGAACTTCTATTCCAAGGTTGGTTTGATTGAGGAGGCTGAGTTAGTTTTTAGAAGAACCGTTATGAAAGATGAGGTGATGTGGAATTTGATTATATCTAGTTATGCGAAGTTTGGGATTGTTGAGAAGGCACTTGAGATGTGCCTTTTGATGAGGGAGGAGGCAAAATTGAGATTTGACTCTGTGACAGTGTCTTCTTTATTGGCTGTTGCTGCGGATAGAAGAGATTTAGGACTTGGTAAGGAGGCACATGGGTTTTGCATTAAGAACGGTTTTGACGCTGATGTGGTTGTGTCGAGTGGGGTGATAGATATGTATGCGAAATGCGGGAGAATGGAAATTGCGAGAAGAGTTTTCGGATTCGCGGCGAAGAGGGATGTTGTGCTGTGGAACACGATGTTGGCAGCTTGTGCAGAGCTTGGTCTTAGTGGGGAGGCCTTGAGATTGTTCTTCCAAATGCAGCTGGAGAGTGTTCCCCCGAATGTGGTGTCGTGGAATTCTGTTATATTCGGTTTCTTTAGAAATGGTCAGGTTGTTGAGGCACAAAACATGTTCTCAGAAATGCTGCACTCATCTGGTGTTAAGCCTAATTTGGTCACATGGACTACTTTGATTTCTGGCCTTGCTCAGAATGGTTTTTGTTATGATGCTCTTATGGCTTTCTGGCGAATGCAGGGTTTCGGAATCAGACCNAATAGCATGAGCATAACGTCTACACTCTCGGCATGTACAGATATGGCGTTGCTAAAATATGGAAGAGCAATTCACGGGTATGTTATGAGGCATTACAATTACATGTCTCCCTCGCTTCAAATCACNACCTCTATTATGGACATGTATGCTAAATGTGGAAATTTGCGTGATGCGAATCGCATTTTCGATATGTGTTCGACAAAGGAGAAGGAGATTCCTGTGTACAATGCAATGATATCTGCTTATGCCTCACATGGTCAATCTAAAGAAGCACTTGCACTTTTCCAACAAATGGTGAAAGAAGGTATAGTACTGCCAGATCACATAACTTTCACCGTTGTATTGTCAGCATGCTGCCATGGGAGATTGGTGAAGGAAGGGTTGGAGCTTTTCAAATATATGGTCTGTGAACTCCAAATGAAGCCAAGTGAGGAACACTATGGTTGTTTAGTTAAACTTCTTGCTAACTATGGCCAGTTAGATGAAGCCCTTAGGATTGTTTTGACAATGCCAAGCCCTCCAGATGCACATATATTAGGATCCATGCTTGCAGCTTGTGGACAGAACCATGAGATTGAACTTGCAGATTATGTAGCAAAATGGTTGTTGAGATTGGAGCCAAATAATCCAGGGAACTATGTGGCTCTTTCAAATGTGTATGCAACGGTTGGAAAATGGGATGAAGTGTCAAATATAAGGGGCTTGATGAAAGAAAAAGGCCTAGGAAAGATTCCTGGGTGTAGCTGGATTGAAGTTGGACAAGAACTTCATGTGTTTGTTGCTAGTGACAGATCACACTCTGAAACAGAGGAGATTTATATGATATTGGATTTGTTGGGATTTGAAATGCATAATAATGCAAAGTATACCCCTGTGTACAGTGTAATAAGCCGACATCCTCAGCTTGTAATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01531	52182	54779	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001531s00034067.1	PF01535.15	PPR	148	177	0.19
Glyur001531s00034067.1	PF01535.15	PPR	221	246	0.011
Glyur001531s00034067.1	PF13041.1	PPR_2	249	298	8.40E-11
Glyur001531s00034067.1	PF01535.15	PPR	328	349	0.78
Glyur001531s00034067.1	PF01535.15	PPR	356	383	0.00053
Glyur001531s00034067.1	PF01535.15	PPR	458	485	0.00015
Glyur001531s00034067.1	PF13041.1	PPR_2	490	539	3.10E-14
Glyur001531s00034067.1	PF01535.15	PPR	604	625	0.33
Glyur001531s00034067.1	PF13041.1	PPR_2	635	681	2.70E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.032
SRR1783600	control	1.005
SRR1783602	moderate drought stress	1.103
SRR1811619	moderate drought stress	1.198

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.835
DRR006520	Root Summer glycyrrhizin high producing strain	2.689
DRR006521	Root Winter glycyrrhizin high producing strain	0.472
DRR006522	Root Winter glycyrrhizin high producing strain	0.431
DRR006523	Root Summer glycyrrhizin low producing strain	1.800
DRR006524	Root Summer glycyrrhizin low producing strain	1.866
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.055
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.954

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.089
SRR2868004	Drought Stress (root)	1.350
SRR2967015	Control (root)	1.207

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.742
SRR9715740	Leaf	0.709
SRR9715741	Leaf	0.300
SRR9715739	Root	0.554
SRR9715742	Root	1.080
SRR9715743	Root	0.768

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.043
SRR8749028	MeJA induced 9h	1.385
SRR8749029	MeJA induced 9h	0.661
SRR8749030	Uninduced	0.464
SRR8749031	Uninduced	0.324
SRR8749032	Uninduced	0.094

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.201
SRR8400027	Control - Root	1.038