Gene detail information of Glyur001529s00032037 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G16800.1 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| NR | KEH39688.1 | 0 | P-loop nucleoside triphosphate hydrolase superfamily protein [Medicago truncatula] |
| COG | YP_003483326.1 | 7.00E-41 | DNA helicase [Aciduliprofundum boonei T469] |
| Swissprot | tr|B6SFA4|MAA3_ARATH | 1.00E-66 | Probable helicase MAGATAMA 3 |
| trEMBL | tr|A0A072VE01|A0A072VE01_MEDTR | 0 | P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313|EMBL:KEH39688.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01529 | 42916 | 56110 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001529s00032037.1 | PF13086.1 | AAA_11 | 1452 | 1828 | 2.90E-62 |
| Glyur001529s00032037.1 | PF13087.1 | AAA_12 | 1835 | 2036 | 4.30E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.310 |
| SRR1783600 | control | 2.335 |
| SRR1783602 | moderate drought stress | 3.087 |
| SRR1811619 | moderate drought stress | 3.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.382 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.322 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.503 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.397 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.805 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.748 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.016 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.103 |
| SRR2868004 | Drought Stress (root) | 8.181 |
| SRR2967015 | Control (root) | 9.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.676 |
| SRR9715740 | Leaf | 2.326 |
| SRR9715741 | Leaf | 2.560 |
| SRR9715739 | Root | 0.271 |
| SRR9715742 | Root | 2.856 |
| SRR9715743 | Root | 2.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.157 |
| SRR8749028 | MeJA induced 9h | 4.572 |
| SRR8749029 | MeJA induced 9h | 1.985 |
| SRR8749030 | Uninduced | 1.702 |
| SRR8749031 | Uninduced | 1.972 |
| SRR8749032 | Uninduced | 1.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.738 |
| SRR8400027 | Control - Root | 7.882 |