Gene detail

Gene detail information of Glyur001528s00028660

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01080.1	8.00E-73	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
NR	XP_003593102.1	3.33E-123	hypothetical protein MTR_2g007830 [Medicago truncatula]
trEMBL	tr\|G7IK15\|G7IK15_MEDTR	1.00E-123	Late embryogenesis abundant protein {ECO:0000313\|EMBL:AES63353.1}

Sequence

Transcript Sequence

>Glyur001528s00028660.1
GAAGTCTTCTTCATCGTCAAAATCCGTCTTTCATTTCCTCTCTCTTTCTTTCATTCTCCATCTCTCTCTATCTCTCGCCATTCTAAGTAGCTAGAACCTAGAAAGAGTGAAACCCACTCGCACACAAGAGAGAGGGAGAGAGAATGACCACAAGAGGTAACCAACCCCAACCCCAACCCCACCCACAACCACAACCAAACGGCGAGAGAAGGCAAAGGCCACCGGCACAAGCGCCGGCACCGTCGCCGTCACCGGCACCTCNATCATATTCAAACGGTTACTTGCCTCAGCAGCAGCAGCAGCACCCACAATACTACCCAAGGACACCGTCACATTCGTCTTCGTCGGCGTCGTTGAAAGGGTGCTGCTGCTGCCTCTTCCTTCTTCTCTCGTTTCTGGCACTTCTGGTGCTTGCGGTGGTTCTGGTCATCCTTCTAGCGGTGAAACCGAAGAAGCCACAGTTCGATCTTCAACAAGTTGGGGTACAATACATGGGCATCACCCCTAACAACCCCACCGGAACCACCGCTTCACTCTCCCTCACCATTCGCCTTCTCTTCACCGCCGTTAACCCCAACAAGGTGGGGATCAAGTACGGCGAGTCCAGGTTTACTGTCATGTACCGCGGGATACCACTGGGGAAAGCCTCGGTTCCCGGTTTCTACCAGGACGCTCACAGTGTAAGGCAGGTGGTGGCCACCATCGCCGTCGATAGGGTCAATCTGCTTCAGGCCGATGCCGCCGATTTGATCCGAGACGCTTCACTCAACGACCGGGTCGAACTTCGGGTATTGGGCGATGTTGGTGCCAAGATCCGGGTCATGAACTTCGATTCTCCNGGTGTTCAGGTCTCCGTGGATTGTGCTATCGTGATCAGTCCAAGAAAGCAATCTCTGACTTACAAGCAGTGTGGATTCGATGGATTGAGTGTTTAATGAGGGGATAATCAGGTCATTTTTGTTGACAACATCAATGTCCTTATTTTCCACTCAATTTCTCCCTTGACTCTCATTTCTTCGATTAATTGTAGGAAGAAATGAGTGGGAAAAGAGAGAGAGAGAGAGAGAGATTAGAACGGCTATCAAAGGAGTCACAAGAAATTGTTTAACTCCAAAGTCAAGGAAGGTGGTTTTGGAAATTAAAGATATCAAATTAGGGAATTAAAACATTTTCTCAAAGAATTTTGCACAAAATTTTTGAATTGATTCCTTCAATTGGAAGACAAAAATGTGCGGAACAACGTGTAAACTGTAAAGTTAATCCAACGAGTGGGTGAGGCATCTGGATTGGCTTTTGTTATTTTGCTCTCTTTCTCTCTGTTTCTGCCTCCCCCCTTTTTTTCCAACTTTCTTTTCTCTCAACTCTTTTGCTTTTGAAAAGTGCGTGAGAAGTTTCTGTTTTACCCATTTGATTATTGAGATCTAATGTAAATTATTTCTCTAATATTTTTTGGAATCTAAAATTTAGAGTGTGTAACAATGTATTTCAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01528	9252	13223	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001528s00028660.1	PF03168.8	LEA_2	141	221	1.80E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.428
SRR1783600	control	26.567
SRR1783602	moderate drought stress	21.180
SRR1811619	moderate drought stress	20.999

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.867
DRR006520	Root Summer glycyrrhizin high producing strain	21.749
DRR006521	Root Winter glycyrrhizin high producing strain	1.796
DRR006522	Root Winter glycyrrhizin high producing strain	1.826
DRR006523	Root Summer glycyrrhizin low producing strain	15.081
DRR006524	Root Summer glycyrrhizin low producing strain	15.203
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.616
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.954

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.839
SRR2868004	Drought Stress (root)	4.459
SRR2967015	Control (root)	5.175

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.276
SRR9715740	Leaf	2.646
SRR9715741	Leaf	2.681
SRR9715739	Root	29.612
SRR9715742	Root	17.386
SRR9715743	Root	21.091

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.110
SRR8749028	MeJA induced 9h	1.377
SRR8749029	MeJA induced 9h	1.102
SRR8749030	Uninduced	0.043
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.057

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.053
SRR8400027	Control - Root	20.840