Gene detail information of Glyur001528s00028658 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15200.4 | 3.00E-115 | protein-protein interaction regulator family protein |
| NR | XP_003547561.1 | 0 | PREDICTED: stress response protein NST1-like [Glycine max] |
| trEMBL | tr|I1MDR5|I1MDR5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G05410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01528 | 629 | 4138 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001528s00028658.1 | PF04696.8 | Pinin_SDK_memA | 160 | 265 | 8.80E-19 |
| Glyur001528s00028658.2 | PF04696.8 | Pinin_SDK_memA | 160 | 294 | 4.40E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.813 |
| SRR1783600 | control | 39.434 |
| SRR1783602 | moderate drought stress | 64.305 |
| SRR1811619 | moderate drought stress | 63.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 66.505 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 65.207 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 92.231 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 89.381 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 72.675 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 72.243 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.470 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 83.646 |
| SRR2868004 | Drought Stress (root) | 90.188 |
| SRR2967015 | Control (root) | 90.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.832 |
| SRR9715740 | Leaf | 45.210 |
| SRR9715741 | Leaf | 50.215 |
| SRR9715739 | Root | 5.471 |
| SRR9715742 | Root | 35.587 |
| SRR9715743 | Root | 31.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 117.877 |
| SRR8749028 | MeJA induced 9h | 99.924 |
| SRR8749029 | MeJA induced 9h | 94.780 |
| SRR8749030 | Uninduced | 88.545 |
| SRR8749031 | Uninduced | 36.889 |
| SRR8749032 | Uninduced | 43.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 104.546 |
| SRR8400027 | Control - Root | 94.100 |