Gene detail

Gene detail information of Glyur001527s00038269.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69830.1	0	alpha-amylase-like 3
NR	XP_003532050.1	0	PREDICTED: alpha-amylase 3, chloroplastic-like [Glycine max]
COG	YP_003951996.1	8.00E-103	alpha-amylase [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q94A41\|AMY3_ARATH	0	Alpha-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|I1KXQ4\|I1KXQ4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G40810.1}

Sequence

Transcript Sequence

>Glyur001527s00038269.1
ATTTTTTTATGTGTCCACAGTTACAAGTTGGTGCTGCAAGCTAAAAAAGGCTAGCTGCTGTGCCTGTGTCTCCGCAGCCTCTTCTTCCTTCCTTCCCCATTATTTTTCCTTCCCAAAACATGAACATCTCCACTTCCGTTTTCTCAGAGCCACTATTCAGCTTCAATCTCAGCCACTACCACCGCACCAGCAGAGAAGCTTCCATTCACCGCCTCAAGCCAAAGCTACACTCTCTTTCTTCTTCTTCCTCTTCTTCCAATTTGACCCTTTTCTCCAACAACTATGACTCTTCTTCTTGGATACCACCCCACAAGTTTCGCACTCCAAAGTTTGAAGCTTTTGCAGCGAACACTGATACCCTCGAGTCCCTTCAGTCCTCTGATGTTATCTTCAACCAGACTTTCCCCATCAACAGAGTTGAACTGTTGGAGGGAAANATCTTTGTAAGATTAGATCAGGGGAAGGAATGGAGAAATTGGGAGCTTACAGTTGGTTGCAATCTACCAGGGAAATGGATTCTTCACTGGGGAGTTTCTCGTGTGGATGATGTTGGAAGTGAATGGGATCAGCCTCCCCGTGATATGATACCTCCTGGATCTATTCCTATAAAGGACTATGCAATAGAGACTCCTTTGAAGAAATCGTCATCGGCTGAAGGATATCATGATGTCAGGATTGATCTTAAACCCGANGATGGAATTTCGGCGATTAATTTTGTTCTAAAGGATGAGGAAACTGGTGCTTGGTATCAACACAAAGGAAGAGATTTCAAGGTTCCTCTGGTCAACTACCCTAAGGAGGATGCTAATATAATTGGACCTAAAAAGGGCTTTAATTTGTGGCCAGCGGCCTTGGGGCAGATGTCTAACATTCTCCTCAAATCAGAAGCAACACATGACAAAGTTCAAGATAACAGCAGTGAATCCAAGAATCCAAAACTTGAAAATAGTCATGTAGAAGGTTTCTATGTAGAACTGCCTATTACCAAGGAAGTTCCTGTCAATAACTCTATCAGTGTCTCCATCAGGAAATCCTNTGAGACAGCTAAAAATCTTCTATGTTTAGAAACAGATATTACTGGAGATGTTCTCCTTCACTGGGGAGTTTGTAGGGATGATTTAAGAAGGTGGGAAGTTCCACCTGCTCCTCATCCGCCACAAACAGTAGCATTCAAAGACAGAGCTTTGAGAACTCAATTACAGCAGTCAAGAGATGGTGGAGAGGGAAATTCAGTACAAATCTCTTTGGGAGAAGAATTTTCAGGATTTCTNTTTGTTGTCAAGCTAAATGAAAATACTTGGTTAAATTGCGAGGGAAATGACTTTTACATCNCTCTCTCAAGTTCTAGCAGCAGCTTAATTAGTGGCAACAAAGAGGACCAATCAGAAGGCGTGCAGAGTGAAGTGATTAAAGAGGCAGGCCAAGAGGAATCCGACTCTCCGTTTACTGATGACATAATCAATGAAATAAGGCATTTGGTTACAGACATTTCCTCCGAGAAGAGTCGAAAAACAAAATCCAAAGAAGCACAAGAAACCATTCTTCAAGAAATTGAAAGACTGGCTGCTGAAGCCTATAGTATCTTCAGAAGCTCTGTCCCAACTTTCTCAGAGGAATCTATCGCGGAACTCGAGGCTGCCGTGGAATCCAAAACACTGAAGCNGACTGAGTTGCCTCCAAAGATATCCTCAGGAACAGGCACAGGTTATGAAATATTATGCCAAGGGTTTAACTGGGAATCTAATAAATCTGGAAGATGGTACATGGAGCTTAAAGAAAAAGCTGCAGAACTATCGTCTATTGGCTTCACTGTGATTTGGTTACCACCACCTACTGAGTCTGTTTCACCTGAAGGATACATGCCAAAGGATTTATACAATTTAAATTCTAGATATGGAACCATTGATGAACTGAAGGATGTGGTCAAAAGATTTCATGAAGCTGNAATCAAAGTGTTAGGAGATGCTGTTTTGAATCACCGCTGTGCCCACTTTAAGAATCAGAATGGCATTTGGAACTTGTTTGGAGGTCGTCTCAACTGGGATGACCGTGCTATTGTAGCTGATGATCCACATTTTCAGGGGAGGGGCAACAAGAGTAGTGGAGATAATTTCCATGCTGCTCCAAACATTGATCATTCGCAGGAGTTTGTGAGAAAAGATATTAAAGAATGGTTATGCTGGATGAGGGAAGAAATTGGATATGATGGGTGGAGGCTTGACTTTGTCAGAGGATTTTGGGGTGGTTATGTAAAGGACTACCTGGATGCAAGTGAACCTTACTTCGCTGTAGGAGAGTACTGGGATTCCCTCAGTTATACATATGGCGAAATGGATCATAATCAAGATGCGCACAGGCAGAGGATCGTTGACTGGATTAATGCTGCCGGTGGTGCTGCTGGTGCATTCGATGTTACGACCAAAGGGATTCTTCACTCTGCATTGGATAGATGTGAATATTGGCGGTTGTCAGATCAGAAGGGAAAACCCCCTGGTGTTCTTGGATGGTGGCCATCTCGTGCTGTTACTTTTTTGGAAAATCATGACACTGGTTCTACACAGGGTCATTGGAGATTTCCTAATGGAAAAGAAATGCAAGGATATGCTTATATTCTTACTCACCCCGGAACTCCTTCAGTGTTCTTTGACCACATTTTCTCTCACAATAAGACTGAAATCGCGTCACTTATCTCTATAAGGAAACGGAACAAGATCCACTGCAGGAGCACAGTTAAAATTTGCAAGGCAGAAAGGGATGTTTATGCTGCTATCATAGATGAGCAAATTGCTATGAAGATTGGACCGGGTCATTTTGAACCACCTAGTGGGTCCAGAAGCTGGTCAACAGCTTTAGAGGGAAGTGATTACAAGATTTGGGAGGCATCATAATATTAATTATTTGTATCTTATGAGTATATACATTCCTTTGGAAAATCTTCTCATTGCATATATTTATATATCTCTTTGCCTTACTCAAGAACAGGCTATTGTATATTAGGATGAAGGTGTGGCAGGCTACAATTGAAGTGTGAGTTGAGTTATGCCTCACTGTTGCATGCTGCATGTATACATATGCTGCACAGAAGCAACATTATAGAGAAGGCTGCAGAGGGTTTCATTTCAGCAAAGTGCCTGGCTCATCTGAAACTAGAAAGTCTTCAATTCAAATAATGAATTGTATCATACTTTACTATATTTAGATGTTTAGTGTGACAAAAATGTATCAAACAACTTGCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01527	24218	34026	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM45,CBM45,GH13

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004556 alpha-amylase activity

GO:0005509 calcium ion binding

GO:0043169 cation binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001527s00038269.1	PF00128.19	Alpha-amylase	553	841	5.40E-24
Glyur001527s00038269.1	PF07821.7	Alpha-amyl_C2	861	920	1.90E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.750
SRR1783600	control	26.716
SRR1783602	moderate drought stress	31.592
SRR1811619	moderate drought stress	30.903

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.194
DRR006520	Root Summer glycyrrhizin high producing strain	23.692
DRR006521	Root Winter glycyrrhizin high producing strain	31.147
DRR006522	Root Winter glycyrrhizin high producing strain	30.500
DRR006523	Root Summer glycyrrhizin low producing strain	38.083
DRR006524	Root Summer glycyrrhizin low producing strain	38.125
DRR006525	Leaf Summer glycyrrhizin high producing strain	120.308
DRR006526	Leaf Summer glycyrrhizin high producing strain	120.134

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.450
SRR2868004	Drought Stress (root)	29.052
SRR2967015	Control (root)	29.564

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.434
SRR9715740	Leaf	69.473
SRR9715741	Leaf	63.463
SRR9715739	Root	3.679
SRR9715742	Root	12.245
SRR9715743	Root	9.619

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.061
SRR8749028	MeJA induced 9h	17.979
SRR8749029	MeJA induced 9h	6.891
SRR8749030	Uninduced	10.141
SRR8749031	Uninduced	6.895
SRR8749032	Uninduced	5.373

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.419
SRR8400027	Control - Root	43.876