Gene detail information of Glyur001526s00032539 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23990.1 | 2.00E-23 | heat shock protein 60 |
| NR | XP_003536270.1 | 2.63E-29 | PREDICTED: chaperonin CPN60-2, mitochondrial-like isoform 1 [Glycine max] |
| COG | YP_007019915.1 | 9.00E-08 | TCP-1/cpn60 chaperonin family protein [Candidatus Endolissoclinum faulkneri L2] |
| Swissprot | tr|P29197|CH60A_ARATH | 1.00E-26 | Chaperonin CPN60, mitochondrial (Precursor) |
| trEMBL | tr|I1LCI1|I1LCI1_SOYBN | 1.00E-29 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G33680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01526 | 13429 | 18155 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.552 |
| SRR1783600 | control | 0.849 |
| SRR1783602 | moderate drought stress | 1.500 |
| SRR1811619 | moderate drought stress | 1.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.921 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.851 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.680 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.408 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.219 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.305 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.699 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.627 |
| SRR2868004 | Drought Stress (root) | 1.099 |
| SRR2967015 | Control (root) | 0.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.845 |
| SRR9715740 | Leaf | 0.842 |
| SRR9715741 | Leaf | 4.017 |
| SRR9715739 | Root | 0.390 |
| SRR9715742 | Root | 1.620 |
| SRR9715743 | Root | 1.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.730 |
| SRR8749028 | MeJA induced 9h | 2.533 |
| SRR8749029 | MeJA induced 9h | 7.551 |
| SRR8749030 | Uninduced | 2.518 |
| SRR8749031 | Uninduced | 6.298 |
| SRR8749032 | Uninduced | 3.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.672 |
| SRR8400027 | Control - Root | 2.809 |