Gene detail

Gene detail information of Glyur001524s00034554

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27190.1	3.00E-37	NB-ARC domain-containing disease resistance protein
NR	KEH38451.1	0	NBS-LRR type disease resistance protein [Medicago truncatula]
COG	YP_002463148.1	1.00E-12	NB-ARC domain-containing protein [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|Q9T048\|DRL27_ARATH	4.00E-38	Disease resistance protein At4g27190
trEMBL	tr\|A0A072VA23\|A0A072VA23_MEDTR	0	NBS-LRR type disease resistance protein {ECO:0000313\|EMBL:KEH38451.1}

Sequence

Transcript Sequence

>Glyur001524s00034554.1
ATGGATATTATTATTTCAGTTGCTTCTAAAGTTGCTGAATATATGGTTGCACCTATTGGATGTCAATTTGGTTACATAGTCTACTACAAGAGAAACCTTGAAAGGCTCAAAACCGAGGTCCAAAAGCTAGAGGAAACCAAAGATAGTGTGAAGCACTCTGTTGATGCAGCTAAAAGGAACGGGGAAGAAATTGAAAATATTGTCCAAAACTGGCTGAACAAAGTGGACAGCACTGTTTCTGCAGCAAAAAAAATTATTGATACTGAAGGCCATGCAACTGCTAAATGTTCAGAAGGAAAATTTGACAGAATTTCGTACCGTGTTGCTTCTCAAGTGACAATCACGCTGTTTGGTAGAGGTTACGAGGCCCTGGACTCCAGAACATCAATGCTGAATGAGATTATGTTGGCATTAAAGGATCCTAACATCTTCATTATTGGAGTGTATGGGATGGGTGGTGTGGGTAAGACAACAATGGTGAAAGAGTTAGCTTGGCAAGCAGAGAAAGATGGGTCATTTGGTGCTGTAGTAATGGCTACAATAACCAGTTCTCCAAATGTGGAAAATATTCAAGGGCAAATTGCTGATGCATTGGATCTACAATTTAACAAAGAGACAAAAGAGGGAAGAGCAAGACAATTACGTGAAAGGATAAGTAAAGAGAAGAGTATTCTTGTTATTCTGGATGACCTTTTGGGGAAACTTGATTTGACAGAAGTGGGGATTCCTTTTGGTGATGATCACAAAGGATGCAAGTTAGTTGTGACATCCAGAGATCTTAACGTGTTGAACTGTGAGATGGGCACCCAAAAAGAATTTAGACTTGAAGTTTTACTTGAGGAGGATAGTTGGAAATTGTTTGAGAAGATGGCTGGTGGTGTTGTTCAAGAATTCAATATAAAACCAATTGCAGTAGAAGTGGCTAGATGTTGTGCTGGTTTGCCCCTTTTGGTAGTTACTGTGGCAAAGGCTTTGAGAAAAAAGGATATCTTTGCTTGGAAGGATGCCTTAAATCAACTAGAGAGATTTGATCTTGAAGGGTTGCATAAGAAAGTCTACTCTACTTTGGAAATGCATGACCTTGTACGTGATGTAGCTAAATCAATTGCCTCTAGGTTTCATCCTACCTATTCTATGCAAAGGTTTAGTGTAATAAAAGATTGGCCCAAGGTAGATGACCTTAAAAACTTCCATCATATCATCCTACCTTCGTCTTACATTCATGAGCTTCCGGAGATGTTGGGGTGCCCAGAGTTAAAGCTACTTCTACTTCATAATATAGTAAAGGTTCTTGATTTATCTGGAATGATGTTTATCCCGTCCCCACCTCCTTCTCTTCGTCTCTTGACAAACCTTCATTCATTAATTCTGGCTGAATGTGTGTTAGAAGACATATCAATAGTTGTAGAACTGGAAAGTCTAGAGATTCTCAGCCTTGAAAGATCTGATATTAAAGTGCTGCCAAAAGAAATAGGACAACTAGCTAATCTTCGAATCAACAACGCAAGTCTAGATGAGCTAAGTAATCTGTCTCAGCTAACAGCGTTGGAGATTATGATCCAAGATACTTCGGTTTTGCCAAGGGACTTGCAAGTCTTTGCAAAGCTTGAAAGATACAACATATTTATTGGTGATATGTGGAAATGGCCTTTAGGATGGTCTTTTGGTGTTTCCAAGTCTTCAAGAACACTCAAGCTCGCAGAGAGTAGTAGTACAAGCATTCTTTTGGATAATGGGTTCAACTTCTTGTTGAATATAGTTGAGGATATGTGCATATTTGGAATACCGTGTGTTAGAGATGTCCTTTATCATTTGAACAGCAATGGTTTTCCGCAACTAAAGCATTTGCACATTCAATGCAGTACTGAATTGAAGTGCATCATTAACTCAATGGGGCGGGTTCATCCCTATCCTGCCTTCCCCAACTTAGAGACTTTGGCTCTTGAAAATCTAGCTAATTTGGAAGATGTGTGCCATGGTCCTATTCCAATACATTCTTTTACCAAACTTAAAAAAATTGAAGTCAAAGGTTGTGATGAGTTGAAGAATGTGTTGCGGTATTCCCTTACTAGAGACCTTCCTCAACTTCTAGAAATAAAAATTTCGGAATGCAAATTGATGACACAGTCTCTTACACTGGAGTGTTTACCTAGCCTAGTTAGTTTCTGTTCCTTACCATTGACACCTAATATGGGCTCTGTGGCACTAATTGATCAGAAGGTTGGGATGCCCCATCTTGAAACCTTGAAGCTGTCAAAGATCAATTCTTGGAAATTATGGGATGACACAATTTCAAGTCATTCTTGTGTTCAAAACTTGACGAGTGTGACCATTGACAATTGTGGCAGCATAGCATATGTATTCTCATCCCTGGTGGCTAGAGAACTTGTAAACTTGAAGTATCTTGAGATTGGTAACTGCCAAGTGTTGGAGGAGATATTTGTCTTAGATGGAAAGTTGGATAATAATGCTTCAGCTAACAGACCACTCTCTGATGAGGAGGTTATATTTCCAAACTTGGAGACATTGGTAATCTCCCACATGGGTCACTTGAAGTCAGTATGGCACTATGAACTAGCTCCAAATTCTTTCTGCGAACTGAAGAAGCTGGAAACTAAATTCTGCAATAAATTATCTAATTTGGTATCAGAGCCAGGTTCTGGGGCTCTGCTTCTGCGCGGTGTCGTCTATAGTTACGGTGTTTTCAGGCAGCCTTCATTGCTACGAGTTCCTTTTCTTAGCAGTGCTCAGTCACTGGTTCTTTTTTCACGGCCTGTCGTTGTCTGCAGCTCGTCCGCCGCCGCCGTCGGCCACCGCCGCCACTGCCACCGATCTGACCGGTCCATCCCTGAAGGAATCGCTGCCAGAAACTGCCCGCGCGCCTCCACGCGCCGCCTTCCTCCGGTCGTTTCAGGCGCGTGTGGGCCACGCGCCGCCGCAAACTGCTCCGTTTCGGATGCCGCCGCCGCGGTTCTGCTCGCCGTCGTCCCCCCTGAAATCCTCCTCGTTGGTTTTGCGGTTTCACCATTTCGGCTTCGTTTTTTGTTTTTCTGCAACTCTTTTGTGATGTCAGGAGACAAGTTAGCCTCCCTGCTCAGTCCCAATGATCTACAGGTGCTGCAAGGTTCATACCGTCTTGACGGGCGCAATTACCTTCAATGGGCCCAACTGGTTCGCACTACTCTTAAGGGATGA

Protein Sequence

>Glyur001524s00034554.1
MDIIISVASKVAEYMVAPIGCQFGYIVYYKRNLERLKTEVQKLEETKDSVKHSVDAAKRNGEEIENIVQNWLNKVDSTVSAAKKIIDTEGHATAKCSEGKFDRISYRVASQVTITLFGRGYEALDSRTSMLNEIMLALKDPNIFIIGVYGMGGVGKTTMVKELAWQAEKDGSFGAVVMATITSSPNVENIQGQIADALDLQFNKETKEGRARQLRERISKEKSILVILDDLLGKLDLTEVGIPFGDDHKGCKLVVTSRDLNVLNCEMGTQKEFRLEVLLEEDSWKLFEKMAGGVVQEFNIKPIAVEVARCCAGLPLLVVTVAKALRKKDIFAWKDALNQLERFDLEGLHKKVYSTLEMHDLVRDVAKSIASRFHPTYSMQRFSVIKDWPKVDDLKNFHHIILPSSYIHELPEMLGCPELKLLLLHNIVKVLDLSGMMFIPSPPPSLRLLTNLHSLILAECVLEDISIVVELESLEILSLERSDIKVLPKEIGQLANLRINNASLDELSNLSQLTALEIMIQDTSVLPRDLQVFAKLERYNIFIGDMWKWPLGWSFGVSKSSRTLKLAESSSTSILLDNGFNFLLNIVEDMCIFGIPCVRDVLYHLNSNGFPQLKHLHIQCSTELKCIINSMGRVHPYPAFPNLETLALENLANLEDVCHGPIPIHSFTKLKKIEVKGCDELKNVLRYSLTRDLPQLLEIKISECKLMTQSLTLECLPSLVSFCSLPLTPNMGSVALIDQKVGMPHLETLKLSKINSWKLWDDTISSHSCVQNLTSVTIDNCGSIAYVFSSLVARELVNLKYLEIGNCQVLEEIFVLDGKLDNNASANRPLSDEEVIFPNLETLVISHMGHLKSVWHYELAPNSFCELKKLETKFCNKLSNLVSEPGSGALLLRGVVYSYGVFRQPSLLRVPFLSSAQSLVLFSRPVVVCSSSAAAVGHRRHCHRSDRSIPEGIAARNCPRASTRRLPPVVSGACGPRAAANCSVSDAAAAVLLAVVPPEILLVGFAVSPFRLRFLFFCNSFVMSGDKLASLLSPNDLQVLQGSYRLDGRNYLQWAQLVRTTLKG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01524	32948	37938	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001524s00034554.1	PF00931.17	NB-ARC	130	357	4.00E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.314
SRR1783600	control	1.459
SRR1783602	moderate drought stress	1.251
SRR1811619	moderate drought stress	1.166

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.488
DRR006520	Root Summer glycyrrhizin high producing strain	0.513
DRR006521	Root Winter glycyrrhizin high producing strain	0.139
DRR006522	Root Winter glycyrrhizin high producing strain	0.232
DRR006523	Root Summer glycyrrhizin low producing strain	0.153
DRR006524	Root Summer glycyrrhizin low producing strain	0.082
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.194
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.199

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.859
SRR2868004	Drought Stress (root)	4.865
SRR2967015	Control (root)	3.674

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.317
SRR9715740	Leaf	0.228
SRR9715741	Leaf	0.674
SRR9715739	Root	0.268
SRR9715742	Root	2.740
SRR9715743	Root	2.228

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.808
SRR8749028	MeJA induced 9h	3.545
SRR8749029	MeJA induced 9h	0.439
SRR8749030	Uninduced	0.956
SRR8749031	Uninduced	0.439
SRR8749032	Uninduced	0.307

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.407
SRR8400027	Control - Root	6.299