Gene detail information of Glyur001522s00034825 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14103.2 | 1.00E-12 | F-box/RNI-like superfamily protein |
| NR | KEH38500.1 | 8.15E-99 | F-box/RNI/FBD-like domain protein [Medicago truncatula] |
| Swissprot | tr|Q9LUC4|FDL43_ARATH | 5.00E-12 | F-box/FBD/LRR-repeat protein At3g14710 |
| trEMBL | tr|A0A072VK28|A0A072VK28_MEDTR | 3.00E-99 | F-box/RNI/FBD-like domain protein {ECO:0000313|EMBL:KEH38500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01522 | 50153 | 52586 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001522s00034825.1 | PF08387.5 | FBD | 318 | 361 | 9.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.076 |
| SRR1783600 | control | 1.065 |
| SRR1783602 | moderate drought stress | 1.587 |
| SRR1811619 | moderate drought stress | 1.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.319 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.321 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.019 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.840 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.456 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.733 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.630 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.552 |
| SRR2868004 | Drought Stress (root) | 1.812 |
| SRR2967015 | Control (root) | 1.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.366 |
| SRR9715740 | Leaf | 0.190 |
| SRR9715741 | Leaf | 0.101 |
| SRR9715739 | Root | 0.954 |
| SRR9715742 | Root | 1.251 |
| SRR9715743 | Root | 1.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.617 |
| SRR8749028 | MeJA induced 9h | 4.514 |
| SRR8749029 | MeJA induced 9h | 3.405 |
| SRR8749030 | Uninduced | 0.777 |
| SRR8749031 | Uninduced | 0.295 |
| SRR8749032 | Uninduced | 0.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.798 |
| SRR8400027 | Control - Root | 2.681 |