Gene detail

Gene detail information of Glyur001522s00034822

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	2.00E-170	NB-ARC domain-containing disease resistance protein
NR	XP_003598667.1	0	NBS-LRR disease resistance-like protein [Medicago truncatula]
COG	YP_001520699.1	7.00E-12	TPR domain-containing protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|G7IW29\|G7IW29_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:AES68918.1}

Sequence

Transcript Sequence

>Glyur001522s00034822.1
ATGGTAGTAGAGCTTGCTGTTGGGGCATTTCTTTCGTCTTTATTTCAAGTGACTCTTGAGAGGTTGGCTTCAATTGATTTCACAGACTATTTCCGTAGAGGCAAACTTGACAAGTTGGTGAAGAATCTTGAGTCTACACTTGGCTCTATCAACCAAGTGTTGGATGACGCAGAGATAAAACAGTACCAGAACCCATATGTGAAGAAGTGGCTTGGTGATGTTAAACATGCTATGTATGAGACAGACCAACTGTTAGATGAGATTGTTACTGATGCTCCACTGAAGAAGCTCAAATTAGCTGAACCTCAACCTGCTTCCAGCAGCAGCAATCTTTTNAGCTTCATACCATCTTTTACTAATCCATTTGAACCTAGGATCAAAGAATTGCTGAAGAACCTAGATTCTCTTGCAGAGCAAAAGGATGTGCTGGGATTGGAACAAGGAACTACTTGTGCTAGTAACGAAGGTGTAGTCAGTTGGAAACCGTCAAATAGATTGCCGACAACATCTTTGGTGGATGAATCTAGCACATATGGTAGAGATGGCAATAAAGAGGAAATAATCAATTTTCTACTTTCAGGCAATGACAGTGGAAACCAGGCACAAGTAATGAGCATAGTGGGTCTGGGTGGCATGGGTAAGACCACCCTTGCTCAACTCGTGTACAATGACCGCAGGATGCAAGAGCAGTTTGAACTCAAAGTTTGGGTCTATGTCTCAGAATCTTTTGATGTTTTTGGACTCACCAAAGTAATTCTTAGGTTGTTTCAGTCTTCTGAGGACTTGAATCAACTCCAACATCAGCTGCAGCAAACACTAATGGGCAAGAAATATTTGCTTGTTCTAGACGATGTCTGGAATGGAAATGGGGAATGTTGGGAGCGTTTACTACTTCCCTTTAACCTTGGGTCTTCTAGAAGCAAGATTATTGTTACAACACGTGACAAAGAGGTAGCATCAATCATGAAATCCACCAAGCTACTCCATTTGAAGCCACTGGAAGAAAGCGAGTGTTGGACTTTATTTATGAGACATGCTTTCCAAGGCAAGGATGCTAGTGAATATCAACCTCTTGAATCAATTGGAAAGAGAATTGTAGACAAGTGTGGAGGGTTGCCTTTAGCTATTAAAACACTGGGGAATCTCCTACGAAGAAAATTCTCTCAACGTGAATGGTTGAAGATATTGGAGATTGACATGTGGCGTTTATCAGAGAATGAAAACAATGTTAACCCGGTGTTGATATTGAGTTACCATAATCTTCCTTCCAATTTGAAGCGTTGTTTTGCATGTTGTTCTATATTTCCCAGAGGTTATAAGTTTGACAAGGATGAATTAATCAAGCTTTGGATGGCAGAAGGTTTGCTAAGGTGCTACAGAACAGAGTCAACAAGCAAAAATGAAGAAGATTTGGGTAATGAATTCTTCAATGATCTAGAGTCAATTTCATTTTTCCAACAATGGAATGATAAAGACTTTTTCATGCATGATCTTATCAATGATTTAGCAAAGTCAGTGTCAGAAGGATTTTGTTTAGGAATAGAGGGTGATAGGGTGCAAGCTATCCCTAAAAGGACACGTCACATTAGGTGGTGCTCTCTTAAAGTAAAAGGTGGTCATAAAAAATTAGAAGATGGTCATAAAACATTACAGCATGTTTATAAGATCAAGGGATTACGCAGTCTATTAATGGTACAAATACAAGCCTTTAGTTCCCCAAGTCTCAAGATATGCAGCAATGTAAAACGTGATATGTTTTCAAGACTACAACATTTGCGGATGTTATCATTCTCTGCTTGTAATCTATTGGAGCTAGTTGATGAGATAAGTAATTTAAAGCTTTTGCGTTATCTAGACCTTTCCAAGAATAGGATTACAAGGTTACCCGATTCCATTTGTATGCTGCATAATTTGCAAACACTGATATTATCATTCTGTATACTGACTGAGCTGCCTTTAGAATTTTACAAACTCATCAATTTACGTCATCTTCATCTCACAAGCACCCTTTTAAAGAAGATGCCAAATCAGATAGGAAGTCTAAANCATCTTCAGACGCTGACTGATTTTGTTGTGGGAAAGCACAAAGGGTCTGATATTAAGGAGTTGGCAAATCTCGACCATCTTCAAGGAACACTCCATATTTCAGGGTTGGAATATGTCATTCATCCTGTAGATGCTGCAGAAGCAAATTTGAAAGATAAGAAACATTTAGAAGAATTACAAATGATGTACAGTCACAATAGAAGAATTGATGGCTCGATAATTGAAAGGGATGTATTGGAGGCTCTTCAGCCAAATAGCAACCTGAACAAGCTCGTCATCCAAGACTACCGAGCCACTAGCTTTCCAGATTGGCTTGGGGGATCTCATTTGCCCAATTTAGTATCTCTTAGACTGCGTAGATGTATATTCTGTTCCCAACTGCCACCAATTGGGAATCTCCCCTTTCTCAAGAGTCTTTCTGTCTCTGGATGTCACGGAATAGAGATAATTGGTGCGGAGTTTTATGGCANTAATTCATCAAATATTGTTGCATTCAAATCCCTTGAATTCTTGGAATTCTGGGAAATGCACANTTGGAAGGAATGGCTATGTCTCGAAGGTTTTCCCTTGCTTAAAGAGCTTACAATAAAATATTGTCCCAAATTTAAAGGGGCCTTGCCGCAACACCTTCCTTCTTTGCAAAAATTGGTGATTTGGGAATGCCGACAGTTGGAGGCTTCAATTCCCAAGGCTGCTAATCTCAGTGAGCTACGTTTGGAGGGATGTGAAAAGATTTTAGTAAAAGAATTGTCATCCAACTTGAAAAGGGTTGACCTTCGTGGAACTCGAGTGATTGAGTCCTCCTTGGAGCAAATTCTGTTCAACAATGCCTTTCTTGAAATGTTGAATGTTCGTGACTTCAATGGTACTGCAAATCCAGAATGCTCCTCTTTACATTTGCGTAGCTGTAATTCTCTTCTCACTCTAAAAATAGAAGAATGGCGCTCCTCCTCATTCCCTGTCGCACTAGACTNGTTCACCAATCTTCNTTCTCTGCATTTGTTCAAATGCCCACAACTAAAATGGGCTCCTGGAGTAGGTTTGCCTTCCAGCCTGAGCAACCTCACAATAGATAAATGCCCTAAACTGATTGCTTCGAGAGAGGAGTGGGGTTTGTTCAATCTTCATTCTCTGAAACAATTCAGAGTTTGTGATGACTTTGAAAACGTAGAGTCCTTCCCTGAGGAAGGTCTGCTTCCACCAAATCTTAACTCTCTCTACATCTCTATCTGTCCAAAGCTAAGGGTAATCAACGAAAGGGGTCTTCACCACCTCAAATCTCTCAAGCATTTAGATATTTATAATTGCCCTTGTCTTGAGCGCTTGNCAGAGGAGGGTCTACCCAACTCCCTTTCTACTTTGCGCCTTTATGGTTGTCCCTTACTTAAGCATCAATATGAAAAGGAGAAAGGAGAGCGTTGGCATAAAATTAGNCACATCCCTTCCGTCACTATTTCCTGA

Protein Sequence

>Glyur001522s00034822.1
MVVELAVGAFLSSLFQVTLERLASIDFTDYFRRGKLDKLVKNLESTLGSINQVLDDAEIKQYQNPYVKKWLGDVKHAMYETDQLLDEIVTDAPLKKLKLAEPQPASSSSNLXSFIPSFTNPFEPRIKELLKNLDSLAEQKDVLGLEQGTTCASNEGVVSWKPSNRLPTTSLVDESSTYGRDGNKEEIINFLLSGNDSGNQAQVMSIVGLGGMGKTTLAQLVYNDRRMQEQFELKVWVYVSESFDVFGLTKVILRLFQSSEDLNQLQHQLQQTLMGKKYLLVLDDVWNGNGECWERLLLPFNLGSSRSKIIVTTRDKEVASIMKSTKLLHLKPLEESECWTLFMRHAFQGKDASEYQPLESIGKRIVDKCGGLPLAIKTLGNLLRRKFSQREWLKILEIDMWRLSENENNVNPVLILSYHNLPSNLKRCFACCSIFPRGYKFDKDELIKLWMAEGLLRCYRTESTSKNEEDLGNEFFNDLESISFFQQWNDKDFFMHDLINDLAKSVSEGFCLGIEGDRVQAIPKRTRHIRWCSLKVKGGHKKLEDGHKTLQHVYKIKGLRSLLMVQIQAFSSPSLKICSNVKRDMFSRLQHLRMLSFSACNLLELVDEISNLKLLRYLDLSKNRITRLPDSICMLHNLQTLILSFCILTELPLEFYKLINLRHLHLTSTLLKKMPNQIGSLXHLQTLTDFVVGKHKGSDIKELANLDHLQGTLHISGLEYVIHPVDAAEANLKDKKHLEELQMMYSHNRRIDGSIIERDVLEALQPNSNLNKLVIQDYRATSFPDWLGGSHLPNLVSLRLRRCIFCSQLPPIGNLPFLKSLSVSGCHGIEIIGAEFYGXNSSNIVAFKSLEFLEFWEMHXWKEWLCLEGFPLLKELTIKYCPKFKGALPQHLPSLQKLVIWECRQLEASIPKAANLSELRLEGCEKILVKELSSNLKRVDLRGTRVIESSLEQILFNNAFLEMLNVRDFNGTANPECSSLHLRSCNSLLTLKIEEWRSSSFPVALDXFTNLXSLHLFKCPQLKWAPGVGLPSSLSNLTIDKCPKLIASREEWGLFNLHSLKQFRVCDDFENVESFPEEGLLPPNLNSLYISICPKLRVINERGLHHLKSLKHLDIYNCPCLERLXEEGLPNSLSTLRLYGCPLLKHQYEKEKGERWHKIXHIPSVTIS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01522	36965	40471	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001522s00034822.1	PF00931.17	NB-ARC	181	456	2.10E-77
Glyur001522s00034822.1	PF13855.1	LRR_8	614	670	6.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.645
SRR1783600	control	1.593
SRR1783602	moderate drought stress	2.770
SRR1811619	moderate drought stress	2.843

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.871
DRR006520	Root Summer glycyrrhizin high producing strain	0.842
DRR006521	Root Winter glycyrrhizin high producing strain	0.509
DRR006522	Root Winter glycyrrhizin high producing strain	0.562
DRR006523	Root Summer glycyrrhizin low producing strain	0.503
DRR006524	Root Summer glycyrrhizin low producing strain	0.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.609
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.596

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.805
SRR2868004	Drought Stress (root)	0.594
SRR2967015	Control (root)	1.032

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.769
SRR9715740	Leaf	2.282
SRR9715741	Leaf	3.854
SRR9715739	Root	0.967
SRR9715742	Root	5.503
SRR9715743	Root	3.941

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.246
SRR8749028	MeJA induced 9h	0.304
SRR8749029	MeJA induced 9h	0.155
SRR8749030	Uninduced	0.094
SRR8749031	Uninduced	0.119
SRR8749032	Uninduced	0.054

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.667
SRR8400027	Control - Root	4.939