Gene detail

Gene detail information of Glyur001521s00036666.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G05990.2	2.00E-133	NAD(P)-binding Rossmann-fold superfamily protein
NR	KHN30887.1	0	Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic [Glycine soja]
COG	YP_008151.1	1.00E-119	enoyl-ACP reductase [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|Q9SLA8\|FABI_ARATH	6.00E-175	Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic (Precursor)
trEMBL	tr\|A0A072TZC5\|A0A072TZC5_MEDTR	0	Enoyl-acyl-carrier reductase {ECO:0000313\|EMBL:KEH22541.1}

Sequence

Transcript Sequence

>Glyur001521s00036666.1
ACAGAAAAAACACAACAACATCGTTTTCATCGACCCAGTTCCAAAGNTTCTTCTACTACTACTCCATTCTCTACCATTAATCTAACACACACCAACAACAAGGAAAACCCCATTTTTGCATTTTGCATTTCCACTCGGGAACACTCTCATTTTTTTCTCCACATTGATCCNCCTTTTGTTGGCACAAGGATCTCTCTACCATCACACATTCATTCAAGATGGCAACGACAACAGTTTCTAACTTTCCACTTGCAATGTCAAGACCCAGGATTCCCTCATCACAAAAGTTTTCAAATGCAGGTCCTGCGATTCTTGGATGTGGGATTAAGGTTGGTTCCTGTGATAAATTGGCAAGTGTTTGTCATGTTGCATCATTGCAACCCTTTCAGAAGGTCTCAACATCATGTGCCATAAAATTTGACAAAATCATAACAAAGGCAATGTCTGAGTCTAGTTCAAACAAGCAAGTTACAGGATTGCCAATTGATTTGAGAGGTAAAAGGGCTTTTATTGCTGGTGTGGCTGATGACAATGGATATGGTTGGGCAATAGCAAAATCTCTTGCAGCAGCAGGAGCTGAAATTCTTGTTGGCACATGGGTACCTGCTTTAAATATATTTGAGTCCAGTCTACGGCGTGGAAAATTTGACGAATCACGCATATTACCAGATGGTTCATTGATGGAGATTACTAAAGTGTATCCCTTGGATGCAGTCTATGACAATCCTGAAGATGTCCCAGAAGATGTAAAAGCAAATAAGCGCTATGCTGGAGCCGCAAATTGGACTGTCCAGGAAGTTGCTGAATCTGTTAAGAAGGATTTTGGCACTATTGACATACTTGTGCACTCACTTGCTAATGGACCAGAGGTCAGCAAACCATTGTCCGAGACATCTCGGAAAGGATATCTAGCTGCCTTGTCTGCATCTAGCGGATCTTCACTCTCTCTAACATACATTGCTTCAGAGAGGATCATTCCTGGATATGGTGGGGGTATGAGTTCTGCAAAAGCTGCTTTGGAAAGTGATACAAGAGTGCTTGCTTTTGAAGCTGGGAGAAAGAAAAGAATCAGAGTCAATACTATATCTGCTGGTCCACTCGGAAGCCGTGCTGCAAAAGCAATTGGTTTCATTGACATGATGATNGACTATTCATTTACCAATGCACCACTGCAGAAAGAACTACANGCAGGTGCTGTTATATATGTTGACAATGGACTAAATGCAATGGGAGTTGGAGTTGACAGCCCAATATTTAAAGACCTTGACATTCCAAAGGACCACCATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01521	19154	25715	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00208	fabI	EC:1.3.1.9 1.3.1.10	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061
			Biotin metabolism	map00780

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001521s00036666.1	PF13561.1	adh_short_C2	100	324	1.60E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.178
SRR1783600	control	12.703
SRR1783602	moderate drought stress	5.514
SRR1811619	moderate drought stress	5.436

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.409
DRR006520	Root Summer glycyrrhizin high producing strain	6.156
DRR006521	Root Winter glycyrrhizin high producing strain	1.101
DRR006522	Root Winter glycyrrhizin high producing strain	1.021
DRR006523	Root Summer glycyrrhizin low producing strain	1.860
DRR006524	Root Summer glycyrrhizin low producing strain	2.022
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.959
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.206

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.487
SRR2868004	Drought Stress (root)	13.024
SRR2967015	Control (root)	12.663

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.881
SRR9715740	Leaf	0.667
SRR9715741	Leaf	0.750
SRR9715739	Root	3.870
SRR9715742	Root	2.986
SRR9715743	Root	3.002

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.963
SRR8749028	MeJA induced 9h	4.382
SRR8749029	MeJA induced 9h	4.392
SRR8749030	Uninduced	0.519
SRR8749031	Uninduced	0.125
SRR8749032	Uninduced	0.601

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.149
SRR8400027	Control - Root	44.420