Gene detail information of Glyur001519s00034462.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01250.1 | 1.00E-21 | Integrase-type DNA-binding superfamily protein |
| NR | AES87852.2 | 9.69E-65 | DNA-binding domain protein [Medicago truncatula] |
| Swissprot | tr|Q1ECI2|ERF23_ARATH | 4.00E-31 | Ethylene-responsive transcription factor ERF023 |
| trEMBL | tr|G7JRD3|G7JRD3_MEDTR | 4.00E-65 | DNA-binding domain protein {ECO:0000313|EMBL:AES87852.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01519 | 15177 | 15812 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001519s00034462.1 | PF00847.15 | AP2 | 35 | 84 | 4.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.318 |
| SRR1783600 | control | 1.360 |
| SRR1783602 | moderate drought stress | 5.555 |
| SRR1811619 | moderate drought stress | 5.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.125 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.551 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.526 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.508 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 157.842 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 158.808 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.187 |
| SRR2868004 | Drought Stress (root) | 2.851 |
| SRR2967015 | Control (root) | 2.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.686 |
| SRR9715740 | Leaf | 27.584 |
| SRR9715741 | Leaf | 17.849 |
| SRR9715739 | Root | 325.822 |
| SRR9715742 | Root | 80.784 |
| SRR9715743 | Root | 114.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 57.187 |
| SRR8749028 | MeJA induced 9h | 37.030 |
| SRR8749029 | MeJA induced 9h | 55.277 |
| SRR8749030 | Uninduced | 292.376 |
| SRR8749031 | Uninduced | 16.438 |
| SRR8749032 | Uninduced | 64.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.107 |
| SRR8400027 | Control - Root | 17.206 |