Gene detail

Gene detail information of Glyur001518s00034902

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G58030.1	5.00E-67	cationic amino acid transporter 2
NR	XP_003525716.1	4.56E-106	PREDICTED: cationic amino acid transporter 2, vacuolar-like [Glycine max]
COG	YP_002774452.1	9.00E-35	amino acid transporter [Brevibacillus brevis NBRC 100599]
Swissprot	tr\|Q9ASS7\|CAAT2_ARATH	3.00E-90	Cationic amino acid transporter 2, vacuolar
trEMBL	tr\|I1K1U1\|I1K1U1_SOYBN	2.00E-106	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G11410.1}

Sequence

Transcript Sequence

>Glyur001518s00034902.1
ATTTGAGTTTCCAAAGCTCTAATCATAAAAAGGGACAAGGAGAGAAGGATATTGCAGGCACATTGACAGGAAGAGAGAACTTGCGCTCAGGACCACTCAGAGGCAGAGAGAAACAGTGTTCTCTTTTTCCCTTTATGGCTTCACACACACACGATATTCTCATTCNCAACCATCCACCCATTACACAATAACAATAAAGCAAAACTACTTCTTAACTCAATTGTCATCATCATCATTCACTTCACTACTCATTTGAAGAATCAGCACATTTTTTTTTTTTTTACATCAAAGCCCAAACCAATGAATACATAAATACATAAATAAATTACAAATGAAACCAAACTTTCCTGGCTCCTCCTAAATTGTTGGGCACACATAGCTTTTTTGAGTTTGANAGAACAAAGAGGGGGAAAGAAAAAAAGAGAGAATTTTGTGATGGGGGTTGTTGTTGATTCACAAGAGGGTGGTGAAATTGGAGGAGGACAGGGTTCATGTTCATGGAGATTCTTAACAAGGAGGAAGAAGGTGGATTCTGCCAATGAGAATAACAACTCTGAATCTCATGGNCAACTTGCCAAGGAGTTAACTGTTCCTCATCTCATGGCAATTGGTGTTGGTGCAACAATTGGTGCTGGTGTGTATGTTCTGGTGGGAACGGTGGCTAGGGAGCATGCTGGACCAGCTATGCCACTCTCATTTCTGGTGGCTGGATTTGCAGCTGCTCTTTCTGCTCTTTGCTATGCTGAATTGGCTAGTCGCTGTCCTTCTGCTGGGAGTGCATATCACTATGCTTACATTTGTGTTGGGGAAGGAGTTGCTTGGGTGATTGGCTGGTCCTTAATACTGGAATATGGAATTGGTGGAGCTGCTGTTGCTCGTGGCATAACCCCTAATTTGGCTGCACTTGTTGGAGGTGTGGACAATTTGCCCAGCTTTTTATCATGTCAGCGTATTCCTGGGATTGATATTGTTGTAGACCCTTGTGCAGCAATTATGATATTTATTGTTACTGGACTCCTTTGTACTGGGATCAAAGAGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01518	63426	67444	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0003333 amino acid transmembrane transport

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001518s00034902.1	PF00324.16	AA_permease	54	200	2.20E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.709
SRR1783600	control	12.697
SRR1783602	moderate drought stress	10.295
SRR1811619	moderate drought stress	10.342

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.908
DRR006520	Root Summer glycyrrhizin high producing strain	9.612
DRR006521	Root Winter glycyrrhizin high producing strain	0.053
DRR006522	Root Winter glycyrrhizin high producing strain	0.052
DRR006523	Root Summer glycyrrhizin low producing strain	65.404
DRR006524	Root Summer glycyrrhizin low producing strain	65.432
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.906
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.298

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	108.712
SRR2868004	Drought Stress (root)	162.239
SRR2967015	Control (root)	122.958

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.253
SRR9715740	Leaf	21.086
SRR9715741	Leaf	22.030
SRR9715739	Root	6.661
SRR9715742	Root	15.018
SRR9715743	Root	12.947

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.858
SRR8749029	MeJA induced 9h	0.134
SRR8749030	Uninduced	0.108
SRR8749031	Uninduced	0.148
SRR8749032	Uninduced	0.083

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	62.264
SRR8400027	Control - Root	60.616