Gene detail

Gene detail information of Glyur001518s00034896.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03750.2	9.00E-87	SET domain protein 20
NR	XP_003555385.2	2.29E-165	PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Glycine max]
COG	YP_004237006.1	4.00E-13	nuclear protein SET [Acidovorax avenae subsp. avenae ATCC 19860]
Swissprot	tr\|Q9SRV2\|SUVR3_ARATH	3.00E-98	Histone-lysine N-methyltransferase SUVR3
trEMBL	tr\|I1NGV6\|I1NGV6_SOYBN	9.00E-166	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G30000.1}

Sequence

Transcript Sequence

>Glyur001518s00034896.1
CTTAGGTCGCCAAACACAAATGACAGAAGAAGGTGGTGTCCCCAGAAAGAGTCGCAACCCGAACGAGTCTCTTCTGGTTCAATGCGCGGAGCTGGTCCTACCATGGCTAACCCATCAAGAGCTCGCCAACGTTTCCNTCACCTGCAAGTCCCTCCACAACCTCTCCCGCTCCATCACCCTCCGCCGCTCCTCCGACGCTTCTAGAACCTTCGAGAACCTTACAATCCCCTTCCTCAACAACAACAACAACAACACCACCACCCAACCTTACGCCTACTTCCTCTACACCCCTTCCCTCATCCTCCCACTCCCTCACTCTAACCTCCCACAACGCCAACCCTGGGGTGGCACTTCCGTAATTTCATCCCCCGCTGCCACGTGTCACCTTCGTTCCGCGGAGTCGGTGGGCCTGGTGGACGAGTTGGGCCGGGCCGTGTCGGGCTGCGACTGCCGCGGGGCCTGTGGTGGGGACGATGGGTGTCCGTGTTCGGGCCTGGATGGGTTGGGTGGTGATGTGGGCCGCGAGTGCGGGCCGAGTTGCCGGTGTGGGCCGGAGGAGTGTGGGAACCGGTCGAGCCGGAAGGGGGTTGCGGTTCGGGTGAAGATTGTGAGGGGGGATGGGAGGAAAGGGTGGGGTTTGTTTGCTGACCAGTTCATTCGGGAAGGGCAGTTCCTGTTTGAGTATGCAGGTGAACTCTTGACAACTAAGGAAGCACAGAGGAGACAGCAATATTATGATGAACTGGCATCGAATGGTCGTTTCTCTTCTGCTCTTTTAGTTGTAAGGGAACATCTTCCATCCGGAAAGGCATGTTTGAGATTGAACATAGATGCAACAAGAATAGGGAACGTTGCACGGTTTGTAAACCATTCGTGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGTTCAGGGGCTTTGTTCCCCCNCCTTTGCTTCTTTGCTTCGAAAGATATCCAAGAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCCCAATGGATTGCCATGCTATTGCAATAGCTCTTCTTGCTTTGGAACATTGCCCTCAGAAGACACTTGAGACATGTTGCTATTTAGAGATGTGGCTTATCAGAGGAGTTTTTGGTTTGGTTTTTATGAGATGGGGACAGGGCCACATTTTGGGGTTGAGCTTGTGTGTATTTGGAAAGGGTAGTTTTCTTAAATTTGACAATAGTTCATAGCATTCATTGCAAGCCTGCAGCACTCTGCTAAATATTCGCAACAGGTGGGAGAGTGTTAGTTAACTACTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01518	23882	26690	-

Gene family

Gene family	subfamily
Transcription Factors Family	SET
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11433	SETMAR	EC:2.1.1.43	Lysine degradation	map00310

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001518s00034896.1	PF00856.23	SET	204	325	1.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.431
SRR1783600	control	7.160
SRR1783602	moderate drought stress	10.672
SRR1811619	moderate drought stress	10.282

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.745
DRR006520	Root Summer glycyrrhizin high producing strain	10.373
DRR006521	Root Winter glycyrrhizin high producing strain	19.735
DRR006522	Root Winter glycyrrhizin high producing strain	18.175
DRR006523	Root Summer glycyrrhizin low producing strain	12.064
DRR006524	Root Summer glycyrrhizin low producing strain	12.021
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.180
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.817

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.193
SRR2868004	Drought Stress (root)	10.277
SRR2967015	Control (root)	9.529

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.111
SRR9715740	Leaf	3.903
SRR9715741	Leaf	7.644
SRR9715739	Root	4.985
SRR9715742	Root	5.675
SRR9715743	Root	6.700

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.092
SRR8749028	MeJA induced 9h	6.003
SRR8749029	MeJA induced 9h	3.936
SRR8749030	Uninduced	5.218
SRR8749031	Uninduced	2.254
SRR8749032	Uninduced	3.510

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.767
SRR8400027	Control - Root	8.719