Gene detail information of Glyur001516s00037329 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23240.1 | 6.00E-34 | ethylene response factor 1 |
| NR | KEH42539.1 | 2.72E-66 | ethylene-responsive transcription factor 1B [Medicago truncatula] |
| Swissprot | tr|Q8LDC8|ERF92_ARATH | 3.00E-40 | Ethylene-responsive transcription factor 1B |
| trEMBL | tr|A0A072VKJ4|A0A072VKJ4_MEDTR | 1.00E-66 | Ethylene-responsive transcription factor 1B {ECO:0000313|EMBL:KEH42539.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01516 | 21732 | 24099 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001516s00037329.1 | PF00847.15 | AP2 | 106 | 143 | 5.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.435 |
| SRR1783600 | control | 0.364 |
| SRR1783602 | moderate drought stress | 0.048 |
| SRR1811619 | moderate drought stress | 0.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.310 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.300 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.112 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.151 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.219 |
| SRR2868004 | Drought Stress (root) | 0.193 |
| SRR2967015 | Control (root) | 0.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.048 |
| SRR9715742 | Root | 0.022 |
| SRR9715743 | Root | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.028 |
| SRR8749028 | MeJA induced 9h | 3.268 |
| SRR8749029 | MeJA induced 9h | 4.909 |
| SRR8749030 | Uninduced | 5.342 |
| SRR8749031 | Uninduced | 10.034 |
| SRR8749032 | Uninduced | 2.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.181 |
| SRR8400027 | Control - Root | 0.106 |