Gene detail

Gene detail information of Glyur001516s00037327.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23240.1	7.00E-35	ethylene response factor 1
NR	KEH42542.1	1.37E-47	ethylene-responsive transcription factor 1B [Medicago truncatula]
Swissprot	tr\|Q8LDC8\|ERF92_ARATH	1.00E-39	Ethylene-responsive transcription factor 1B
trEMBL	tr\|A0A072VL38\|A0A072VL38_MEDTR	5.00E-48	Ethylene-responsive transcription factor 1B {ECO:0000313\|EMBL:KEH42542.1}

Sequence

Transcript Sequence

>Glyur001516s00037327.1
ATGTCTGAGCTAAAACATGAGCAACCACACAGAAGAAGCAACAGAACAGAAGGTAGTTGGCTGGCTAATATGTCTCCCCGTCTCTATCATCAGAACCATGATTGGGAAATGCTGCTGCAGGATCCCAATTCAGAAGTTCTTAGTACAGATTCACAGCTGGCACTACCAATAACCAACAAAAACGAGCCGCCAAAGCAATTAGTGAAGATCAAATGTGAAGTGCAGCAGAATATGAAGCAGAGTTCATATATAGGTGTTAGGAAAAGGCCTTGGGGTAAATTTGCGGCAGAGATCAGAGACACAACGAGGAACGGCGCAAGGGTATGGCTTGGAACCTTTGATACCGCAGAGGGTGCTGCTTTGGCTTATGACCAAGCTGCATTCTCCATGAGGGGCAACAACGCCGTGCTCAACTTTCCTGTCAAAAGGGTAAAAGAGTCGTTGCAAGAGATGGAATATTATGATTACCGCAATGGGTGTAATTATAATTCGCCAGCACTTGCACTCAAGGAGAGGCACTCCCTCCAAAGAAAGTTGTGTACAGTAAATGAGGATGTAAAGCTACAGTCTTGGAATTGGGTTCGTGCAGAGTCAATGGGTGGCGAGGAGCAGAACAATTTCAACAATTGTGCATTGGCTAAAGGTGTCCATATTCCAGGGTTGCATATGGAAGGTGCAATCTACGAACCGAAGTGTGCCCCTGACGACATCCCACCGGTGACCTACGATCTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGAACTTGTAGTCAGAGGGAGCTCGGAAGTTGGCGTTGGAGAGAGCTTTGGCGGCGTCGGCATGCCGTTGGTCGTCGTCAAGATCAGCGGCGATGGATCGGTCGTTGTCGGAGACCAGATCGGCAGAAGAGAGGGCAACCTTCGTCGGTGGTTGATCGGAGGTCATAAGGAACAGAATATCAGGCATGGAGGATCACCGATCAAGCCCCGTTGGTGGATAAGGATTGTACCTTTCAGGGATAGAGGACCTTACACCCGGGGGTGCACACTTCGGTTCGTAGACTGCACCTTCCAAGGACACATGGGAGAGATAGGAGATACCTTGAGTTTTGTCGTGCTCCATGCTTCAAGAGAGAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01516	8249	11469	+

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001516s00037327.1	PF00847.15	AP2	81	133	5.60E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.755
SRR1783600	control	0.632
SRR1783602	moderate drought stress	0.617
SRR1811619	moderate drought stress	0.560

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.030
DRR006520	Root Summer glycyrrhizin high producing strain	0.030
DRR006521	Root Winter glycyrrhizin high producing strain	0.030
DRR006522	Root Winter glycyrrhizin high producing strain	0.012
DRR006523	Root Summer glycyrrhizin low producing strain	0.013
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.036
SRR2868004	Drought Stress (root)	0.097
SRR2967015	Control (root)	0.004

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.023
SRR9715739	Root	0.281
SRR9715742	Root	0.082
SRR9715743	Root	0.076

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.751
SRR8749028	MeJA induced 9h	0.581
SRR8749029	MeJA induced 9h	0.515
SRR8749030	Uninduced	0.279
SRR8749031	Uninduced	0.827
SRR8749032	Uninduced	0.232

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.219
SRR8400027	Control - Root	0.465