Gene detail information of Glyur001515s00043440.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59200.1 | 2.00E-11 | F-box/RNI-like superfamily protein |
| NR | XP_004513274.1 | 9.88E-28 | PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Cicer arietinum] |
| Swissprot | tr|Q9LX51|FBL64_ARATH | 1.00E-12 | F-box/LRR-repeat protein At3g59200 |
| trEMBL | tr|I3S024|I3S024_MEDTR | 5.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:AFK33616.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01515 | 19857 | 20231 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.178 |
| SRR1783600 | control | 0.957 |
| SRR1783602 | moderate drought stress | 2.366 |
| SRR1811619 | moderate drought stress | 2.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.865 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.106 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.566 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.295 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.171 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.097 |
| SRR2868004 | Drought Stress (root) | 0.018 |
| SRR2967015 | Control (root) | 0.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.164 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.754 |
| SRR8400027 | Control - Root | 0.926 |