Gene detail information of Glyur001511s00039600 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07740.1 | 1.00E-133 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_003540737.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial-like [Glycine max] |
| Swissprot | tr|Q9LQQ1|PPR20_ARATH | 2.00E-162 | Pentatricopeptide repeat-containing protein At1g07740, mitochondrial (Precursor) |
| trEMBL | tr|I1LQV0|I1LQV0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G07220.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01511 | 11772 | 16151 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001511s00039600.1 | PF13812.1 | PPR_3 | 71 | 98 | 0.01 |
| Glyur001511s00039600.1 | PF13041.1 | PPR_2 | 137 | 179 | 3.10E-08 |
| Glyur001511s00039600.1 | PF13041.1 | PPR_2 | 194 | 242 | 2.30E-14 |
| Glyur001511s00039600.1 | PF12854.2 | PPR_1 | 260 | 293 | 1.10E-05 |
| Glyur001511s00039600.1 | PF13041.1 | PPR_2 | 299 | 348 | 9.20E-19 |
| Glyur001511s00039600.1 | PF13812.1 | PPR_3 | 372 | 402 | 0.00016 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.813 |
| SRR1783600 | control | 4.738 |
| SRR1783602 | moderate drought stress | 5.558 |
| SRR1811619 | moderate drought stress | 5.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.437 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.473 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.051 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.736 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.331 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.526 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.355 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.835 |
| SRR2868004 | Drought Stress (root) | 4.255 |
| SRR2967015 | Control (root) | 5.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.541 |
| SRR9715740 | Leaf | 0.568 |
| SRR9715741 | Leaf | 1.514 |
| SRR9715739 | Root | 1.162 |
| SRR9715742 | Root | 3.877 |
| SRR9715743 | Root | 3.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.634 |
| SRR8749028 | MeJA induced 9h | 3.348 |
| SRR8749029 | MeJA induced 9h | 2.521 |
| SRR8749030 | Uninduced | 2.355 |
| SRR8749031 | Uninduced | 0.944 |
| SRR8749032 | Uninduced | 1.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.360 |
| SRR8400027 | Control - Root | 8.775 |