Gene detail information of Glyur001509s00036518 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G13010.1 | 5.00E-119 | Oxidoreductase, zinc-binding dehydrogenase family protein |
| NR | AFK36431.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_007081531.1 | 2.00E-48 | Zn-dependent oxidoreductase [Pleurocapsa sp. PCC 7327] |
| Swissprot | tr|Q9SV68|QORH_ARATH | 1.00E-158 | Putative quinone-oxidoreductase homolog, chloroplastic |
| trEMBL | tr|I3S839|I3S839_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK36431.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01509 | 24676 | 28008 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001509s00036518.1 | PF08240.7 | ADH_N | 34 | 94 | 2.70E-08 |
| Glyur001509s00036518.1 | PF13602.1 | ADH_zinc_N_2 | 191 | 320 | 6.50E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.486 |
| SRR1783600 | control | 0.489 |
| SRR1783602 | moderate drought stress | 1.531 |
| SRR1811619 | moderate drought stress | 1.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.300 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.954 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.224 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.225 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.911 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.018 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.470 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.778 |
| SRR2868004 | Drought Stress (root) | 89.691 |
| SRR2967015 | Control (root) | 64.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.399 |
| SRR9715740 | Leaf | 4.634 |
| SRR9715741 | Leaf | 7.878 |
| SRR9715739 | Root | 0.314 |
| SRR9715742 | Root | 0.203 |
| SRR9715743 | Root | 0.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.145 |
| SRR8749028 | MeJA induced 9h | 28.055 |
| SRR8749029 | MeJA induced 9h | 12.944 |
| SRR8749030 | Uninduced | 82.432 |
| SRR8749031 | Uninduced | 98.827 |
| SRR8749032 | Uninduced | 60.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.902 |
| SRR8400027 | Control - Root | 2.281 |