Gene detail

Gene detail information of Glyur001509s00036515

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G13010.1	7.00E-127	Oxidoreductase, zinc-binding dehydrogenase family protein
NR	XP_004506376.1	0	PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic-like [Cicer arietinum]
COG	YP_007081531.1	2.00E-56	Zn-dependent oxidoreductase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q9SV68\|QORH_ARATH	2.00E-168	Putative quinone-oxidoreductase homolog, chloroplastic
trEMBL	tr\|I3S839\|I3S839_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK36431.1}

Sequence

Transcript Sequence

>Glyur001509s00036515.1
AAATATTTTCATGTATAATAAAGTGAGAGAATGGTTAACACAGAACAACAAATGCGCAATAGTTTAGGGGGTGCTGTGGCGAAGGATATGGCTCCGAATACGATGCAAGCGCTTCAGTACGATTCCTATGGCGGAGGTGCCGCTGGATTAAAGCATGTTCAAGTTCCTGTTCCCACTCCAAAGAGCAATGAGGTTTTATTGAAATTGGAAGCAACTAGCATAAACCCAGTTGATTGGAAGATTCAGAAGGGTCTTCTGCGCCCTTTGTTTCTCCCTAGAAGCTTTCCCCACATACCTTGTACTGATGTAGCAGGAGAGATAGTAGAGATTGGACCACAAGTCAAAGATTTCAAAGTTGGCGACAAAGTCATTGCTAGGCTCTCACACCAATATGGAGGTGGATTAGCCGAGTTTGCAGTGGCTAGTGAGAGCTTAACAGCTGCCAGACCATCTGAAGTCTCAGCTGCTGAAGGCTCGGGTTTACCTATTGCCGGTCTCACAGCTTGTGATGGCCTCGCTCAAATTGCNGGAATCAAGCTTGATGGGACNGNCCAGCCCAAGAANNTTTTAGTAACTGCTGCTTCAGGTGGTGTAGGTTCNTATGCTGTTCAACTTGCTAAACTTGGGAACCACCATGTGACAGCCACTTGTGGGGCTCGCAACATTGACCTTGTTAAGGGCTTAGGTGCTGATGAGGTTCTTGACTATAGGACCCCAGAGGGAACAGCACTCAGGAGTCCATCTGGGAGGAAATATGATGCAGTGATAAATTGTACCACTGGAATACCATGGTCGACTTTTGATCCTAATTTGACTGAAAGGGGGATTGTTGTGGATTTAACACCTGGTGTAAGTTCATTGATGACATTTGCCTTGAAGAAACTTACTTTTTCCAAGAAGAAGCTGGTGCCATTTGTTGTAACTGTCAAGCGTGAGGGCCTGGAATATCTATTGCAATTAGTGAAGGATGGGAAACTCAAGACAATTATTGACTCCACGTATCCTTTGAGCAAAGCTGAAGATGCTTGGGCTAAGAGCATTGATGGCCATGCTACTGGAAAAATCATTGTGGAGCCATAGGCACAGTTTGCTTGGAGTTGTTTGTTGTATTTATGGTTTCTACTTTTCAGCACAAGGTTTGTGTAAGCTCAGAAAATGAATAACATGGCATATGCTGTAAGGAATTTATATTCATACTTGTAATATGCTACTACCGTTGGAATCAAGACACCTGACACATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01509	7391	9508	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001509s00036515.1	PF08240.7	ADH_N	53	117	2.40E-09
Glyur001509s00036515.1	PF13602.1	ADH_zinc_N_2	218	347	8.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	53.755
SRR1783600	control	54.016
SRR1783602	moderate drought stress	44.746
SRR1811619	moderate drought stress	44.417

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.885
DRR006520	Root Summer glycyrrhizin high producing strain	58.779
DRR006521	Root Winter glycyrrhizin high producing strain	166.958
DRR006522	Root Winter glycyrrhizin high producing strain	165.938
DRR006523	Root Summer glycyrrhizin low producing strain	45.160
DRR006524	Root Summer glycyrrhizin low producing strain	44.820
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.987
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.529

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	74.055
SRR2868004	Drought Stress (root)	78.954
SRR2967015	Control (root)	69.690

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.887
SRR9715740	Leaf	65.897
SRR9715741	Leaf	58.661
SRR9715739	Root	62.213
SRR9715742	Root	65.985
SRR9715743	Root	69.497

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.295
SRR8749028	MeJA induced 9h	46.417
SRR8749029	MeJA induced 9h	55.169
SRR8749030	Uninduced	37.959
SRR8749031	Uninduced	22.875
SRR8749032	Uninduced	35.374

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	77.505
SRR8400027	Control - Root	86.823