Gene detail

Gene detail information of Glyur001508s00031913

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26360.1	0	TCP-1/cpn60 chaperonin family protein
NR	AES63823.2	0	TCP-1/cpn60 chaperonin family protein [Medicago truncatula]
COG	YP_008796628.1	3.00E-128	thermosome subunit alpha [Candidatus Caldiarchaeum subterraneum]
Swissprot	tr\|Q84WV1\|TCPG_ARATH	0	T-complex protein 1 subunit gamma {ECO:0000303\|PubMed:11599560}
trEMBL	tr\|G7IPS8\|G7IPS8_MEDTR	0	T-complex protein 1 subunit gamma {ECO:0000256\|RuleBase:RU004191}

Sequence

Transcript Sequence

>Glyur001508s00031913.1
AAGCAAGAGGCGAAATAAATAAAAGTGTGGAAATGTTCCAGGGTTTTCTAGTTGTAGCACCATTTTGGCGGAAAACCTGAGCGGAGCCTCTATCACTGTCACTCACTTACTGCTGCTACGCACTCTTGCACTCATTTCTCCTCCAAAACCGATCATTCTCCGCCGCCGGCCACCGCTTCCGCCGTCGTTACCATTACCGATTGAGCACTCTCCAGCCAAGTTCAGTGAACCTAATCTCCAATTTTCACAAGCATATTCGGAAGCAACTNCTCTGCTTACTGGATTTAGTTTCTGTGTGCGAGAAATCTGAAAACACTTTGAAACCGACAAGAAACCATGCACGCGCCAGTTCTAGTTCTGAAGGACTCTTTGAAACGTGAGTCTGGAGCAAAGGTGCATCATGCTAATATTCAGGCGTCAAAGGCTGTTGCGGACATAATCCGGACAACATTGGGACCGAGGTCCATGCTAAAAATGCTTCTTGATGCTTCGGGAGGAATTGTAGTGACTAATGATGGAAATGCTATCCTACGTGAATTAGATGTTGCTCACCCAGCTGCGAAGTCTATGATTGAACTAAGTCGCACCCAAGATGAAGAAGTAGGAGATGGAACCACATCTGTCATCATTCTTGCTGGTGAGATGCTCCATGTTGCCGAAGCATTCATTGACAAACACTATCACCCTACAGTTATTTGCCGAGCATATAACAAAGCTTTGGAGGATGCTATTACTGTTCTTGACAAAATTGCAATGACTATTGATGCTCAGGATCGAGGTACAATGCTGGGGCTCGTAAAAAGCTGCATAGGTACCAAATTCACAAGTCAATTTGGGGACTTAATTGCTGATTTAGCCATTGATGCTACTACAACAGTAGGTGTTGATATTGGCCAAGGTTTGAGAGATGTAGATATTAAAAATTATATTAAGGTTGAGAAGGTCCCTGGTGCGCAGCTGGAGGATTCAAGAGTTCTCAAGGGAGTTATGATAAACAAAGATGTGGTTGCCCCTGGCAAGATGAGGAGAAAGATTGTCAACCCACGTATCATTCTTCTTGATTGTCCTCTTGAGTATAAAAAGGGTGAAAACCAAACAAATGCTGAACTGCTTAAAGAAGAAGACTGGAGTCTCTTATTGAAGATGGAGGAAGAATACATTGAAGAGCTCTGCATGCAGATATTGAAGTTTAAACCAGACTTGGTAATTACAGAGAAGGGTCTTAGTGATTTGGCATGCCATTATCTGAGCAAGCATGGAGTTAGTGCAATCAGGAGGCTGAGGAAAACTGACAATAATAGAATCGCCAGGGCATGTGGTGCTGTTATTGTTAACAGACCAGATGAATTGCAGGAATCTGATGTTGGTACTGGTGCGGGGTTATTTGAAGTTAAGAAAATTGGAGATGAGTTCTTTTCCTTTATTGTTGATTGCAAAGATCCCAAAGCCTGTACTGTACTATTAAGAGGTGCTAGTAAGGATCTCTTGAACGAGGTTGAAAGAAACCTACAGGATGCCATGTCTGTTGCAAGGAACATAATAAAAAATCCAAAACTCCTTCCTGGAGGTGGTGCTACAGAGTTGACTGTGTCAGCTACTTTGAAACAGAAGAGTTCATCTATTGAAGGCATAGAGAAGTGGCCCTATGAAGCTGCTGCCATTGCCTTTGAAGCTATACCACGGACTTTGGCACAAAATTGTGGAATTAATGTCATCCGGACTATGACTGCGCTACAAGGAAAACATGCAAATGGAGAAAATGCATGGATTGGCATAGATGGAAATACCGGTGTCATCGCTGACATGAAAGAGCGCAAGATCTGGGATGCCTATAACGTGAAGGCACAAACGTTCAAGACTGCCATTGAAGCTGCATGCATGCTTCTGAGGATTGATGATATAGTGAGTGGGATCAAGAAGAAGACCCCTGGAGGAGGCCAGGCTCCTTCAAAGCCTAAGGTTGAGACCGAGGCAGATGCTGACGGCGAGCAAATCCTTCCTGACTGAAAACACAGTTCACCTGACACTGTTTTTTGACAGAGTTGAAAATTTGTTAGAGGGAATGTGGAGTAAACAACTGCCTAATGGAATGAAGGTAGCTTCATGGAATCAATTAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01508	46990	53744	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function

GO:0005524 ATP binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001508s00031913.1	PF00118.19	Cpn60_TCP1	31	524	1.50E-150
Glyur001508s00031913.2	PF00118.19	Cpn60_TCP1	31	524	1.50E-150

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	63.891
SRR1783600	control	64.235
SRR1783602	moderate drought stress	85.105
SRR1811619	moderate drought stress	84.143

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	90.508
DRR006520	Root Summer glycyrrhizin high producing strain	89.313
DRR006521	Root Winter glycyrrhizin high producing strain	113.712
DRR006522	Root Winter glycyrrhizin high producing strain	111.364
DRR006523	Root Summer glycyrrhizin low producing strain	57.175
DRR006524	Root Summer glycyrrhizin low producing strain	57.095
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.989
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.936

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	81.221
SRR2868004	Drought Stress (root)	53.224
SRR2967015	Control (root)	53.557

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.419
SRR9715740	Leaf	26.455
SRR9715741	Leaf	24.257
SRR9715739	Root	28.259
SRR9715742	Root	69.884
SRR9715743	Root	64.695

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	133.672
SRR8749028	MeJA induced 9h	69.935
SRR8749029	MeJA induced 9h	97.677
SRR8749030	Uninduced	11.258
SRR8749031	Uninduced	7.332
SRR8749032	Uninduced	15.015

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	82.295
SRR8400027	Control - Root	79.767