Gene detail

Gene detail information of Glyur001508s00031912.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08430.1	1.00E-82	SWIB/MDM2 domain;Plus-3;GYF
NR	XP_004512648.1	0	PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9FT92\|Y5843_ARATH	1.00E-98	Uncharacterized protein At5g08430
trEMBL	tr\|I1L3P9\|I1L3P9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G28660.1}

Sequence

Transcript Sequence

>Glyur001508s00031912.1
CAGGGTGTTTTTATTTTACTATTTTCTGCTGCCAATTGATGTCTTTCCTTTTTATATTAAATTTGACAAAGGTGAAAACATGGGAATGGAGAAATTTGGTGGGTAAAATACTGGGTATCAGTGGTGAAGATTGAATTTAAGATTATGATAGAAAGGATGGACGTTGAGGCACAATGTGGTTCTTTCTGGATAGAGGAAATTAAAGGGAAGGTTCAGACCTCTGTGAGAAAGAAAAGGAAATACAGAACAAAGAAAAAGGAGTACAATGGATGGGGATCAACTTCCCTTATTCGGTTTCTTGAATCCATTGGTAGAGATACAAGCAACAAGATGACTCAAAGTGAGGTAGCTGAAATTGTAAGTGGGTACGTTAAGCAGAATAACCTTATTCATCCCACNAAAAAGAAAAGAATTGTGTGTGATGAGAGGCTTCATTTGTTGTTCGGAAGGAAGAGCATTGGCCGGTTGAAAATCAGTGACTTGCTCGAGTCACACTTTGCNGATAACTGTGGAGAATCTTCTGATGATATTTACTTTGACTCAGAAGATGATGAGAATGCCTCNGTAATGTGTGAAACCCCAAGACCTGTGTCTTCGGAGAGAAAGAGTCAACCGAAAAAACCTGTTGTGGAAAAACCAAGGAGCTGTTTCGCCGCCATCAATCCTTTCAACATCAAGCTTGTTTATTTAAAGAGGAGTCTAGTTGAGGAACTTTTAAAGGACCCTGAAACTTTTGAGACCAAAGTAGTTGGAAGCTTCATTAGAATCAGATGTGACCCAAATGACTACTTTCAGAAAAACTCACACCAGCTTCTGCAAGTCACAGGTATAAAGAAGAGCTCGGGAGTGGATGGGGAAATTCGCCTGCAAGCTTCTGGTTTCATTAAAGACATCAGCATTCGCATGCTTTCAGATGATAATTTCTCTGGGGAGGAGTGTGAGGATTTGCATCAAAGAGTAAAAGATGGATTGTTGAAGAGACCTATGATTGTGGATATAGAGGAAAGGGCAAGAATATTGCATGAGGATATGACTAAGCACTACCTACGGAAGAGGGATAAGCTTCAGAGTCCAGATGAACAAGAACGGTTATTGCATGAAATTCCTCAAGTTATTGCAGATGATCTAGAATCAGAATCTACAACACCAGATGTTCCAGAGGAAAAGGTAGAAAACAATTTACAAGAGTTATGGCAGGCTACCTGTACAAAAGCATCTTCAGTGACCGAGGTCCCGAAAGCAGTCACAGATGGTTTTGCATGCAAGCCTACAGAACTGTACAAGAAGCTTCAGAGTCCAGATGAACAGGAATCTTTATTGCATGAAATTCCTCAAGTTATTGCAGATAATATAGAATCAGAATCTAAAAAAGCAGACGTTCCAGATAAAAAAGTAGAAAACAATATACAAGAGTTATGGCAGACTACCTGTACAAAAGCATCTTCAGTGACTGAGGTCCCGAAAGCAGTTACAAATGGTTTTGCATGCAAGGCTACAAAACTGGATATTGCCGATCTAGCAAAACAAGAAAGCAATTCACCAAAGTCAATTCTCAGTCTCAATAAAGCATCACAAGTTCCTCTTTTCATTATGGCAATGAATAGCACTATGTTGAATCGCATTTCTCGTGACACTGCCGCAGAGCACCAATGGTCTGGTGCGCCTGTTCAACGGCAGCCAGAGCAACAAATAGACTTTGCATGTAAGAAGGATGGTGTGTCTAAGCCAGCCGAATCAAATGTAGCTAAGATCTCTCAAGGACTGCCGGCCAAGCAGGTGCGGCCGTCTCAGATTCAGGTTATAGAGCTAAGCGACGATGATGACGAGGAAAATGAAAAACCAAGCACCGTAAAACCGGTAAAACTGCATCCTGCGGAGCAATTAAAACCGGTTCCTGCAGAGCAATTGCAATCCGAGATGTGGCATTACAGGGATCCCCAGGGAGTGGTGCAAGGACCGTTCTCCATAATCTCTCTAAAACATTGGAGTGATGCTTGCTACTTTGGTCCAGACTTCAAGGTTTGGAAAGCAGGCCAAAGCCAATTTGAAGCTGTACTATTGGTGGATATTCTATCCCAAATTTTCCCCCGTGGATCAAAATGCATATGATGCTACTTTTTCAATCCAGATCAATAATTCGGTTTGATTAACCAACCTGCAACTTATAATTGTAACTGGGAAATCTTGCTCTCTCAAATTGAATCTAATTGCATCTGATGCATTTTAATCCAGGTCAAGAATTCTGTTTGATTCTTAGGCAACCCTGCAACTTATAATTGTTGTAAACTACTAACTAGGAACTCATGATCTCTCCTAACTAAATTGTTTTTCCTCCCTCCTTTATCTTGCCAAGATGAACCGTGTCATTCATGCATGGTGCATCCAAATGTTGGATTGCTAGTAGAATGTTGTTCTATGTTGCAATGATCCAGACAAGGCTAAGGTTTGTCCAAGCTGCTGATTGTGATGGGATTTACATGAATTTCAATCACTCATAAAAGTGTACTGGAAAGAGTTTGTTAGTGTATTGTTAATATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01508	37832	44600	+

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0016570 histone modification

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001508s00031912.1	PF02201.13	SWIB	50	118	2.80E-14
Glyur001508s00031912.1	PF03126.13	Plus-3	176	274	1.80E-19
Glyur001508s00031912.1	PF02213.11	GYF	592	635	7.90E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.572
SRR1783600	control	16.812
SRR1783602	moderate drought stress	18.888
SRR1811619	moderate drought stress	19.060

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.261
DRR006520	Root Summer glycyrrhizin high producing strain	22.808
DRR006521	Root Winter glycyrrhizin high producing strain	29.106
DRR006522	Root Winter glycyrrhizin high producing strain	28.093
DRR006523	Root Summer glycyrrhizin low producing strain	28.353
DRR006524	Root Summer glycyrrhizin low producing strain	28.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.859
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.899

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.763
SRR2868004	Drought Stress (root)	47.706
SRR2967015	Control (root)	44.514

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.950
SRR9715740	Leaf	30.578
SRR9715741	Leaf	33.767
SRR9715739	Root	2.760
SRR9715742	Root	14.820
SRR9715743	Root	12.456

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.388
SRR8749028	MeJA induced 9h	38.858
SRR8749029	MeJA induced 9h	35.612
SRR8749030	Uninduced	38.738
SRR8749031	Uninduced	36.488
SRR8749032	Uninduced	30.996

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.999
SRR8400027	Control - Root	37.450