Gene detail information of Glyur001507s00032447 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39940.1 | 2.00E-133 | FAD/NAD(P)-binding oxidoreductase family protein |
| NR | XP_004489369.1 | 0 | PREDICTED: uncharacterized protein YtfP-like isoform X2 [Cicer arietinum] |
| COG | NP_681937.1 | 3.00E-94 | carbon dioxide concentrating mechanism protein CcmK [Thermosynechococcus elongatus BP-1] |
| trEMBL | tr|C6TL13|C6TL13_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G02250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01507 | 44306 | 50033 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001507s00032447.1 | PF03486.9 | HI0933_like | 4 | 352 | 5.10E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.414 |
| SRR1783600 | control | 3.335 |
| SRR1783602 | moderate drought stress | 3.135 |
| SRR1811619 | moderate drought stress | 3.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.877 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.647 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.171 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.399 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.980 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.057 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.058 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.462 |
| SRR2868004 | Drought Stress (root) | 5.653 |
| SRR2967015 | Control (root) | 5.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.622 |
| SRR9715740 | Leaf | 3.733 |
| SRR9715741 | Leaf | 3.555 |
| SRR9715739 | Root | 2.366 |
| SRR9715742 | Root | 3.385 |
| SRR9715743 | Root | 4.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.377 |
| SRR8749028 | MeJA induced 9h | 0.222 |
| SRR8749029 | MeJA induced 9h | 0.868 |
| SRR8749030 | Uninduced | 0.104 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.249 |
| SRR8400027 | Control - Root | 20.786 |