Gene detail information of Glyur001507s00032445 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27100.1 | 3.00E-74 | Actin cross-linking protein |
| NR | KHN34197.1 | 2.17E-159 | hypothetical protein glysoja_033390 [Glycine soja] |
| trEMBL | tr|I1N617|I1N617_SOYBN | 4.00E-159 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G02230.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01507 | 37630 | 40409 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001507s00032445.1 | PF04601.8 | DUF569 | 1 | 142 | 2.90E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.655 |
| SRR1783600 | control | 6.289 |
| SRR1783602 | moderate drought stress | 4.551 |
| SRR1811619 | moderate drought stress | 4.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.228 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.988 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.342 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.242 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.786 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.588 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.189 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.570 |
| SRR2868004 | Drought Stress (root) | 1.478 |
| SRR2967015 | Control (root) | 1.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.927 |
| SRR9715740 | Leaf | 0.559 |
| SRR9715741 | Leaf | 1.304 |
| SRR9715739 | Root | 10.119 |
| SRR9715742 | Root | 6.705 |
| SRR9715743 | Root | 6.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.069 |
| SRR8749028 | MeJA induced 9h | 0.291 |
| SRR8749029 | MeJA induced 9h | 0.096 |
| SRR8749030 | Uninduced | 1.255 |
| SRR8749031 | Uninduced | 0.617 |
| SRR8749032 | Uninduced | 0.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.448 |
| SRR8400027 | Control - Root | 6.192 |