Gene detail

Gene detail information of Glyur001507s00032439.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15050.1	7.00E-148	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
NR	AES74697.2	0	BGGP beta-1-3-galactosyl-O-glycosyl-glycoprotein [Medicago truncatula]
trEMBL	tr\|G7KKG8\|G7KKG8_MEDTR	0	BGGP beta-1-3-galactosyl-O-glycosyl-glycoprotein {ECO:0000313\|EMBL:AES74697.2}

Sequence

Transcript Sequence

>Glyur001507s00032439.1
AAAAAAACAAGCTCCTCTTGTACTAATGTATTATTATACCCTTGCTGTTAGTTGTGTATAACTTACATTCCCCTCTCTCACACGTTCCTAGTAGAAAAAAGAACGAAGAGCAACACACACTAACACCCAAATCACCATTTTTCTCAAAGACAAACACCACCCACCTGAAGAATCTCTATTTCCTCAACACCCCACACCTCAAAATCCAATCTTTTTTCTCTCATTCCCCCAAACAGGTTACAAAGTGTATTGCAACACTTCTGGGTCTGTTAAAAATCTAATTTTTGTTGGGTTTTCTTTCTCTGGGGAGATTCTCACACCAAATCTGAACCAGAAAAGGAAACCCAATTAACAACAACAACAAAAACACTAACACTATGAAGAAATTGAAGAACTATTACATGCACATGAGGCACCACAACCACAACCACAATTCAGAACGAAAATGGGTCTTCCCACTCGCAATCGGTTCATTACTCTCTCTCTTCCTTCTCTTCGTTGCAACGCTAACCTCGCCACAGGGCACACCCATTCTCCCATTCTACCGTTCCATCACAGCTTCATACTCAGTTTTCGTTGAATCAAAGCTCCACCCTTTACCGGTCTCGTCGCTCCCGCCNCCGCCGCGCCTCGCTTACCTCATCTCCGGCTCCGCCGGTGACGGCGGCGCCGTGAAGCGNGTGCTTCTGGCGCTTTACCACCCACATAACCGTTATGTTGTGCACCTTGACCTTGAGTCCTCTAAGGAGGAGCGTTTGGATCTGAAGGAGTTCGTGATGAGCCACGCGCTGTTTAAGCGATTTGGGAATGTTAAGATCATTGAGAAGGCGAATCTGATCACCTATAGGGGACCCACCATGGTGGCTAACACTCTCCACGCTGCGGCTATTCTCCTTAGGGAATGTGGGGATTGGGATTGGTTCATCAATCTCAGTGCCTCTGATTACCCACTTGTCACTCAAGATGATCTGCTGCACACGTTTTCGTACTTGCCACGAGATCTTAATTTCATTGATCATACTAGTGACATTGGATGGAAAGATCATCAGCGTGCGAGGCCAATAATCATTGATCCGGGGTTGTACATGAATAAGAAGCAAGATGTGTTTTGGGTTACACAGAGGAGAAGTAGACCAACTGCCTTCAAGCTTTTCACAGGATACTTCCACACGGTCATTTGTAACGCTCAAGAGTTCAGGAACACAACAGTGAATAGCGATCTACACTTCATTTCCTGGGACAATCCTCCCAAGCAGCACCCCCACTACCTCACACTCGCCGATATGAAAGGCATGGTCAACAGCAATGCTCCCTTTGCAAGGAAGTTCCACAGAGACGATCCGGTATTAGACAAAATCGATTCTGAACTATTGTCCCGCGGTCCCGGAATGACCGTCCCAGGAGGTTGGTGCATAGGAAACNGGGAGAACGGCACCGACCCTTGCTCCGTGATCGGTAACACTACGGTTCTGAGGCCTAGCCAGGGTTCAAAAAGGCTTGAAACGTTAATCAGCTCATTGTTGTCGAATGAAAATTTCCGGCCTAGACAGTGTGTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01507	1566	5419	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT14

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0008375 acetylglucosaminyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001507s00032439.1	PF02485.16	Branch	85	244	2.70E-40
Glyur001507s00032439.1	PF02485.16	Branch	261	306	2.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.638
SRR1783600	control	46.873
SRR1783602	moderate drought stress	39.413
SRR1811619	moderate drought stress	38.450

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	49.026
DRR006520	Root Summer glycyrrhizin high producing strain	49.615
DRR006521	Root Winter glycyrrhizin high producing strain	31.055
DRR006522	Root Winter glycyrrhizin high producing strain	29.466
DRR006523	Root Summer glycyrrhizin low producing strain	57.163
DRR006524	Root Summer glycyrrhizin low producing strain	55.604
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.780
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.794

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.528
SRR2868004	Drought Stress (root)	45.024
SRR2967015	Control (root)	44.394

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.653
SRR9715740	Leaf	13.635
SRR9715741	Leaf	23.050
SRR9715739	Root	15.971
SRR9715742	Root	28.386
SRR9715743	Root	28.084

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.251
SRR8749028	MeJA induced 9h	64.360
SRR8749029	MeJA induced 9h	30.886
SRR8749030	Uninduced	36.722
SRR8749031	Uninduced	28.468
SRR8749032	Uninduced	16.660

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.161
SRR8400027	Control - Root	46.296