Gene detail information of Glyur001506s00037428 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47690.1 | 4.00E-16 | binding |
| NR | XP_006584104.1 | 9.43E-22 | PREDICTED: sister chromatid cohesion protein PDS5 homolog B-B-like isoform X2 [Glycine max] |
| Swissprot | tr|O04716|MSH6_ARATH | 3.00E-09 | DNA mismatch repair protein MSH6 |
| trEMBL | tr|I1KNL5|I1KNL5_SOYBN | 4.00E-22 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G39830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01506 | 562 | 1270 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.016 |
| SRR1783600 | control | 1.961 |
| SRR1783602 | moderate drought stress | 1.983 |
| SRR1811619 | moderate drought stress | 1.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.877 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.749 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.221 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.968 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.619 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.228 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.585 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.834 |
| SRR2868004 | Drought Stress (root) | 3.559 |
| SRR2967015 | Control (root) | 2.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.802 |
| SRR9715740 | Leaf | 0.401 |
| SRR9715741 | Leaf | 0.267 |
| SRR9715739 | Root | 0.070 |
| SRR9715742 | Root | 0.495 |
| SRR9715743 | Root | 1.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.733 |
| SRR8749028 | MeJA induced 9h | 40.625 |
| SRR8749029 | MeJA induced 9h | 21.762 |
| SRR8749030 | Uninduced | 31.935 |
| SRR8749031 | Uninduced | 10.853 |
| SRR8749032 | Uninduced | 11.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.756 |
| SRR8400027 | Control - Root | 4.407 |