Gene detail information of Glyur001505s00031334 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76020.1 | 1.00E-65 | Thioredoxin superfamily protein |
| NR | AFK34834.1 | 6.14E-122 | unknown [Lotus japonicus] |
| COG | YP_005368931.1 | 1.00E-07 | DSBA-like thioredoxin domain-containing protein [Corallococcus coralloides DSM 2259] |
| trEMBL | tr|I3S3J2|I3S3J2_LOTJA | 2.00E-122 | Uncharacterized protein {ECO:0000313|EMBL:AFK34834.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01505 | 47005 | 52982 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001505s00031334.1 | PF13462.1 | Thioredoxin_4 | 47 | 213 | 5.20E-08 |
| Glyur001505s00031334.4 | PF11779.3 | DUF3317 | 1 | 43 | 4.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.797 |
| SRR1783600 | control | 20.011 |
| SRR1783602 | moderate drought stress | 23.137 |
| SRR1811619 | moderate drought stress | 23.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.018 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.964 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.986 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.731 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.370 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.073 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 57.052 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 57.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.373 |
| SRR2868004 | Drought Stress (root) | 38.401 |
| SRR2967015 | Control (root) | 30.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 95.064 |
| SRR9715740 | Leaf | 102.746 |
| SRR9715741 | Leaf | 88.554 |
| SRR9715739 | Root | 20.651 |
| SRR9715742 | Root | 14.902 |
| SRR9715743 | Root | 14.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.758 |
| SRR8749028 | MeJA induced 9h | 32.548 |
| SRR8749029 | MeJA induced 9h | 37.483 |
| SRR8749030 | Uninduced | 24.452 |
| SRR8749031 | Uninduced | 24.053 |
| SRR8749032 | Uninduced | 32.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 39.310 |
| SRR8400027 | Control - Root | 36.322 |