Gene detail

Gene detail information of Glyur001503s00028865.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64220.2	0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
NR	XP_004504800.1	0	PREDICTED: calmodulin-binding transcription activator 2-like isoform X1 [Cicer arietinum]
COG	YP_001975179.1	4.00E-06	ankyrin repeat domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
Swissprot	tr\|Q6NPP4\|CMTA2_ARATH	0	Calmodulin-binding transcription activator 2
trEMBL	tr\|K7KPP6\|K7KPP6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G24430.2}

Sequence

Transcript Sequence

>Glyur001503s00028865.1
AAAAAAAATATAGGTGGTAGCTGTTTGGGTCATAAACATCTTCACGTCACTGTGTCACACAGAAGAAGCTGACTGGAAAGAGCGAAAAGAGCAGAAAAAAAGGAAATTAGTGTGTGACAAAGATATATAGAGATAGAGATATAGATACATACACTCCTTCCTTTCCGCGTTGATCTCCCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTTTGATTATTCTCAGTCTTCGCATGGCGGAGCGGGCTTCGTACGGATTGGGGCCTCGACTAGATCTTCAGCAATTACAAGTTGAAGCCCANCATCGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTCGTAATTATCGGATGTTTCAAATCACATCAGAACCACCTAACAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGGTACTTTAGAAAGGATGGACACATTTGGAGAAAGAAAAAAGATGGAAAGACCGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTACGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTCAAGGTTAACAAGACCAATATTGGTGCAAGTACAGATACGGATGAGGTTACATCAGATTCCCAGAAGGGCAGTTCTGTGTCATCTGCCTTTCCCGCAAATTATGGTAGCATGCCTTCAGGAAGTATGGATTCCATGAGCCCAACTAGCACTTTGACTTCTTTATGTGAAGATGCTGATTCAGAGGATATTCACCAAGCAAGTTCAGGATTACATACTTTTCATGAGTCACAAAACACGGGGAATGGTCGGCTGATGGATAAGATTGATGCTCATTCAAATAGTTCATATCTTATGCATCCCTTTTCAGGTGATCATGGACAGTTATCAACTTCTAGAACAAACTATATCCCACTTGTTCAGGGGGATAAATCTAGACAAAGTGATACTACTTACGTTGAGGGTCAGAGAGCACACAGCATAGCATCCTGGGACAATGTCATGGAGCAATCTGCAGGATTTCATACTGATCCTTCTCTTGTATCATCTAATTCCATTCCATCAAGTTCAGTGGGAAATATCCTTGAACAAGAACATACTGCCCTTACTGAAGTGGCAGGGGCCTCTCAGTCTCTCCAATCGAATTGGCAGATTCCTTTTGAAGACAATACAGGAGAATTGCCTAAATGGAGCTTTACCCAATCATTGAGTTTGGAATTTGGATCTGATTATAACACTGGCTTACTGGGAAAAGAAACTAATAATGCAAGTCCAGAAATTGGTCCTGACCTGTTCATTTTTAATTGCGAGCCAAAAGAGCAGTCTGTGCAACAAAATACACATGCACAATCTCAGGATGCACTGAAATATGAGTGTGAAGTTCCTGGTAAAGACGGTATCAACTATGCCTTGACCATGAAGCATGCTTTTCTGGATGGAGAGGAGAGCCTGCAGAAGGTTGATAGCTTCTCTAGGTGGATCACTAAAGAACTTGCAGCGGTGGATGATCTGCACATGCAGTCTTCCCCTGGTATTTCATGGAGCACAGATGAATGTGGGAATGTGATAGATGATACCTCATTGAACCTGTCCCTATCTCAAGACCAGCTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAGATTAAGGTNCTTATCATGTGGATAATACTTGTGTTGATTATTGGAACATTTTTTAAGAGTCAACCAGAGGTGGCAACATGTAACTGGTCCTGTATGTTTGGGGAAGTTGAAGTTCCTGCTGAGGTTTTAGCTAACGGAATTCTGTGCTGTCAAGCTCCACCACATGAGATTGGACGGGTCCCTTTCTACGTAACATGTTCCAACAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAGTATAGAGAGGGCTTTGCAAGAAATGTAGATTTGGCAGATTTTTTTAACAGCTCAACTGAAATGCGGCTTCATTTGCGACTGGAGGAGTTACTTTTTTCAAACTCAGTGCACCCTTCAAATCAAATTTTTGAGGATGATATGGAGAAAAGAAACTTAATTTTTAAGCTTATTTCNCTGAAAGAGGAAGAGGAATACTCGAAAAATGAAGAGCCAACTGTAGAGATGNATATATCGAAACACAGGTTGGAGGCGCATATGTTTCACAGGCAGGTTAAGGAAAAGCTATATTCCTGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGGCCACATGTATTAGGTAAAGACGGGCAAGGTGTGTTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAACACCAATAGTAACTGCTGGTATTAATATCAACTTCCGTGATGCGAATGGATGGACGGCTCTACACTGGGCTGCATCCTGTGGCAGAGAGCGAACAGTTGCTGTCCTTGTCTCCATGGGTGCAGCTGCTGGAGCATTGACAGATCCATGCCCAGAATTCCCTTCAGGAAGAACACCTGCAGATCTTGCTTCTAGCAACGGCCACAAAGGAATTTCTGGTTTTCTTGCGGAGTCATTATTAACTAGCCACCTTGAATCACTCACAGTGGATGATGTGAATAAAGATGGAGGGAAAGAAACTTCAGGAATGAAAGTAGTGCAGACAATCTCAGAGCGAATTGCTACCCCTGCGATTTGTGGTGATATACCAGATGCTATCTGCCTTAAGGATTCTCTTGATGCTGTCCGAAATGCTACACAAGCTGCTGATCGGATATACCAAGTGTTCAGAATGCAATCATTTCAGAGAAAGCAGTTAGCTCAGTATGAAGACGATGATGAGTTTGGATTGTTGGATCAGCAAGCTCTTTCACTTCTAGCTTCTAAGGCACGCAAATCTGGACAAGGAGAGGGTTTAGCCAATGCTGCTGCAATACAAATACAGAAAAAGTTTCGTGGCTGGACAAAGAGAAAAGAATTCTTGTTCATTCGCCAAAGAGTTGTTAAAATCCAGGCTCATGTAAGAGGTCACCAAGTAAGAAAGAAGTATAAACCAATCATTTGGTCCGTGGGAATCCTGGAGAAGGTCATATTACGCTGGAGGCGCAAGGGCAGTGGTTTACGTGGATTTCGACCAAATGCCNTTACTAAGGTCCCCAACCAACCAAACGATCCAGTGAAGGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAGCAAAGGTTCCAAAAGGCCCTTTCAAGAGTTAAGTCCATGGTCCAATATCCAGAGGCTCGGGCTCAATACCGGCGGGTGCTAAATGTGGTAGAGGACTTCCGTCATACCAAGGCAAGTAATTTGAGTTTGGTAAATTCGGAAGAGGCTGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTNTTAGATGATGAAAATTTCTTACCTATAGCATTCGATTGATTCCCTGGGGTGGCTACTCGTNCCCTCTCTTCACTGTAAATAGAAGATCCTAACATCGTGTGTGTGTATATATATATATAAATATAATATATACAACAGAACTACTTGGATCCTGCATGTTTTGTGACAAAATCCAGTTGGATCCAAGGCTGGGTATAAATAGATTGAGAGCTAGAATTGCATTCGGGTTTGACAGTTCAAATACTGTAATCTAGACATGGTTTGATTTTACTGACATGTTGATTTTCATATAACAGAATT

Protein Sequence

>Glyur001503s00028865.1
MAERASYGLGPRLDLQQLQVEAXHRWLRPAEICEILRNYRMFQITSEPPNRPPSGSLFLFDRKVLRYFRKDGHIWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVKVNKTNIGASTDTDEVTSDSQKGSSVSSAFPANYGSMPSGSMDSMSPTSTLTSLCEDADSEDIHQASSGLHTFHESQNTGNGRLMDKIDAHSNSSYLMHPFSGDHGQLSTSRTNYIPLVQGDKSRQSDTTYVEGQRAHSIASWDNVMEQSAGFHTDPSLVSSNSIPSSSVGNILEQEHTALTEVAGASQSLQSNWQIPFEDNTGELPKWSFTQSLSLEFGSDYNTGLLGKETNNASPEIGPDLFIFNCEPKEQSVQQNTHAQSQDALKYECEVPGKDGINYALTMKHAFLDGEESLQKVDSFSRWITKELAAVDDLHMQSSPGISWSTDECGNVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIKVLIMWIILVLIIGTFFKSQPEVATCNWSCMFGEVEVPAEVLANGILCCQAPPHEIGRVPFYVTCSNRFACSEVREFEYREGFARNVDLADFFNSSTEMRLHLRLEELLFSNSVHPSNQIFEDDMEKRNLIFKLISLKEEEEYSKNEEPTVEMXISKHRLEAHMFHRQVKEKLYSWLLHKVTETGKGPHVLGKDGQGVLHLVAALGYDWAITPIVTAGININFRDANGWTALHWAASCGRERTVAVLVSMGAAAGALTDPCPEFPSGRTPADLASSNGHKGISGFLAESLLTSHLESLTVDDVNKDGGKETSGMKVVQTISERIATPAICGDIPDAICLKDSLDAVRNATQAADRIYQVFRMQSFQRKQLAQYEDDDEFGLLDQQALSLLASKARKSGQGEGLANAAAIQIQKKFRGWTKRKEFLFIRQRVVKIQAHVRGHQVRKKYKPIIWSVGILEKVILRWRRKGSGLRGFRPNAXTKVPNQPNDPVKEDDYDFLKEGRKQSEQRFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRHTKASNLSLVNSEEAVDGVEDLIDIDMLLDDENFLPIAFD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01503	56373	65498	-

Gene family

Gene family	subfamily
Transcription Factors Family	CAMTA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001503s00028865.1	PF03859.11	CG-1	22	136	1.50E-53
Glyur001503s00028865.1	PF12796.2	Ank_2	686	754	6.40E-08
Glyur001503s00028865.1	PF00612.22	IQ	907	925	0.006
Glyur001503s00028865.1	PF00612.22	IQ	931	949	0.00017

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.320
SRR1783600	control	22.332
SRR1783602	moderate drought stress	26.336
SRR1811619	moderate drought stress	25.979

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.621
DRR006520	Root Summer glycyrrhizin high producing strain	42.351
DRR006521	Root Winter glycyrrhizin high producing strain	24.924
DRR006522	Root Winter glycyrrhizin high producing strain	24.163
DRR006523	Root Summer glycyrrhizin low producing strain	58.656
DRR006524	Root Summer glycyrrhizin low producing strain	58.652
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.011
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	51.011
SRR2868004	Drought Stress (root)	67.342
SRR2967015	Control (root)	53.343

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	69.010
SRR9715740	Leaf	37.331
SRR9715741	Leaf	86.231
SRR9715739	Root	8.745
SRR9715742	Root	63.799
SRR9715743	Root	52.814

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	52.217
SRR8749028	MeJA induced 9h	77.201
SRR8749029	MeJA induced 9h	75.346
SRR8749030	Uninduced	69.890
SRR8749031	Uninduced	129.354
SRR8749032	Uninduced	77.025

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.578
SRR8400027	Control - Root	54.667