Gene detail information of Glyur001503s00028864 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21790.1 | 4.00E-97 | tobamovirus multiplication 1 |
| NR | XP_003524734.1 | 0 | PREDICTED: tobamovirus multiplication protein 1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q402F4|TOM1_TOBAC | 8.00E-137 | Tobamovirus multiplication protein 1 |
| trEMBL | tr|I1K2N3|I1K2N3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G24420.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01503 | 51882 | 54619 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001503s00028864.1 | PF06454.6 | DUF1084 | 21 | 290 | 1.40E-130 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.794 |
| SRR1783600 | control | 0.726 |
| SRR1783602 | moderate drought stress | 0.584 |
| SRR1811619 | moderate drought stress | 0.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.970 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.952 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.433 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.672 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.295 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.002 |
| SRR2868004 | Drought Stress (root) | 7.462 |
| SRR2967015 | Control (root) | 8.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.058 |
| SRR9715740 | Leaf | 0.549 |
| SRR9715741 | Leaf | 0.871 |
| SRR9715739 | Root | 0.443 |
| SRR9715742 | Root | 0.461 |
| SRR9715743 | Root | 1.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.521 |
| SRR8749028 | MeJA induced 9h | 2.391 |
| SRR8749029 | MeJA induced 9h | 1.436 |
| SRR8749030 | Uninduced | 6.641 |
| SRR8749031 | Uninduced | 17.215 |
| SRR8749032 | Uninduced | 6.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.152 |
| SRR8400027 | Control - Root | 2.797 |