Gene detail

Gene detail information of Glyur001503s00028863

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34750.1	5.00E-118	Protein phosphatase 2C family protein
NR	KEH31214.1	0	protein phosphatase 2C-like protein [Medicago truncatula]
COG	YP_003709340.1	1.00E-24	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q9S9Z7\|P2C10_ARATH	6.00E-153	Probable protein phosphatase 2C 10
trEMBL	tr\|A0A072UN34\|A0A072UN34_MEDTR	0	Protein phosphatase 2C-like protein {ECO:0000313\|EMBL:KEH31214.1}

Sequence

Transcript Sequence

>Glyur001503s00028863.1
CAAAAACAGTTGTAAATTGTAATAATAATAATCAAACAAACAAACAGTGTCAGCAATAAANCAACACACAGGAAACTGCAAAAAAGTCAATAAGGGCAACCTATGCCTTTTGGCCCCCCCACTCCCATTTCCATTCCATTTGCAAGCAAAAAACGACTCAACTCAAAAGACTTTCTCAACAAAACCCGACGGTTATCTATAGTCTTAATAACAATCCCTTATTATATATTTTCCGTGTTGTTGTTCATTGTGTGCCAATTCCCTCTCTCTATTCATCTCTGAAGAATTATTAGAGACGACCCAGTTCCTTCCCAGATCTTCCCTATCGTTTCCGTGGGAAAAAGTTGGGATTTTTATTTTTGGATCGGTTAGCAGAAGAGTTAGATGTTAAGTAATAAACGGAAAAGTTGAGGTGGGGCTGAAATATATGGATAGTCTCTGTTGCTTCAGCTCTGTCAGTAAGGTGGTTGGAGGGCGTTCTTCATGTAACTCCGGNAAAGGCAAGAGCAATCAGTCCCCTGTCAAGTATGGCTTTAGCCTTGTTAAAGGGAAAGCCAACCACCCGATGGAGGACTATCANGTAGCAAAATTTGTCCATTTCAAAGGGCAAGAGCTAGGACTTTTTGCTATATATGACGGACACCTGGGAGACAGTGTACCATCATATTTACAAAAGCATCTNTTTTCTAATATCCTGAAGGAAGAGGACTTCTGGAATGATCCATTCATGTCCATTTCCAAAGCTTATGAGACAACAGATCAGGCAATTCTTTCTCACAGTCCTGATTTGGGGCGAGGAGGATCAACTGCTGTGACTGCAATTCTCATAAATAATCAGAAATTATGGGTAGCCAATGTTGGAGATTCACGAGCAGTTCTGTCAAGGGGAGGGGTGGCTGTACAGATGACTACTGATCATGAGCCCAATACGGAGCGGGGCAGCATTGAGAACAAGGGTGGCTTTGTCTCAAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCGGTTTCTCGAGCATTTGGAGACAAAAATCTCAAAACACATTTGCGATCTGATCCTGACATTCAGTATGCTGATGTTAACCCAGATATTGAGCTTTTGATACTTGCCAGTGATGGTCTATGGAAGGTAATGGCAAATCAAGAAGCCGTTGATATTGCAAGAAAGGTAAAGGATCCACAAAGGGCTGCTAAACAACTAGCTACTGAGGCATTGAACAGAGACAGTAAGGATGATATTTCCTGCATCGTAGTGCGTTTCAAGGGATGAAAAGGGAACATGCACACATACTCCCTAAATTTTCAGTGTGTGAAGATGGCTACAGTTTATACATTGTTGAACATGGGATTTTATGCCATTTATTTTAAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01503	46252	50065	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001503s00028863.1	PF00481.16	PP2C	42	273	4.80E-56
Glyur001503s00028863.2	PF00481.16	PP2C	42	273	4.80E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.898
SRR1783600	control	38.254
SRR1783602	moderate drought stress	32.024
SRR1811619	moderate drought stress	31.556

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.136
DRR006520	Root Summer glycyrrhizin high producing strain	54.504
DRR006521	Root Winter glycyrrhizin high producing strain	100.593
DRR006522	Root Winter glycyrrhizin high producing strain	99.692
DRR006523	Root Summer glycyrrhizin low producing strain	84.372
DRR006524	Root Summer glycyrrhizin low producing strain	84.108
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.139
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.159

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	82.223
SRR2868004	Drought Stress (root)	136.785
SRR2967015	Control (root)	120.190

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	74.741
SRR9715740	Leaf	73.360
SRR9715741	Leaf	114.365
SRR9715739	Root	28.341
SRR9715742	Root	52.771
SRR9715743	Root	46.211

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	83.877
SRR8749028	MeJA induced 9h	76.601
SRR8749029	MeJA induced 9h	92.571
SRR8749030	Uninduced	139.954
SRR8749031	Uninduced	362.447
SRR8749032	Uninduced	170.359

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	88.702
SRR8400027	Control - Root	85.698