Gene detail

Gene detail information of Glyur001503s00028860

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09420.1	0	translocon at the outer membrane of chloroplasts 64-V
NR	KEH31213.1	0	translocon at the outer membrane ofs-like protein [Medicago truncatula]
COG	YP_006593569.1	7.00E-65	amidase [Methylocystis sp. SC2]
Swissprot	tr\|F4KCL7\|OE64M_ARATH	0	Outer envelope protein 64, mitochondrial
trEMBL	tr\|A0A072UQ78\|A0A072UQ78_MEDTR	0	Translocon at the outer membrane ofs-like protein {ECO:0000313\|EMBL:KEH31213.1}

Sequence

Transcript Sequence

>Glyur001503s00028860.1
TAAAAAAGAAAAAGATTCAAAGAGGCAGGTCTTCTACTTTGTTTCCTGAGCATTCCTTATTGTGAATGTGAGCTNAGCTGTGCACCCGCCACCAAGTCACTAACCTCTTTCTCTCTCCTCCTCTAACTAAAACCCTTCCAAAACCCCCATTCTTCTAATTCCAAACCCTTTTTCTCTGATCGACCATGTCCAAATCACTCAAGCTAATCAAGGACCATGCGTCCAACCCCAAACTCTGGTTGGTCGTCGGAATAGGAGTCGCCGGGATCGTCGTTCTGGCGGAGACACGCCGGAGAAGACGCCGTGGGAAGACACAGAAAGAAGACTTTGGCGCTTTTGTTGAGCGTTTTGAGCTACTTCCCTTCCCTCAGCCTCCTCCTCCTGCTGCCAAGCAAATGCTCTCTGCTCTCACCTTTGCCTTAAGCGACATATTTGATGTGAAGGGCTATGTGACGGGTTTTGGAAATCCTGAGTGGAAGAGAACGCATGAAGAGGCAGAGAAGACTGCAATTGTGGTGACTGNTCTGCTCAAGAATGGGGCTACTTGTGTTGGCAAGACTGTTATGGATGAGTTCTCTTTTGGGATTTCTGGTGAGAACAAGTACTATGGAACTCCAACGAATCCTCAGGCGCCATCATGTATCCCGGGAGGGTCNTCTAGTGGTTCAGCTGTGGCAGTTGCTGCAGGCCTTGTTGACTTTGCCGTTGGTACTGATACTACAGGATGTGTGAGAATTCCAGCATCATTCTGTGGTACTTTTGGTTTTCGACCATCCCATGGGGCTGTATCTACCATTGGAGTTCTTCCAAATGCACAAAGCTTAGACACTATTGGATGGTTTGCCCGCGATCCATCTGTCCTACATCGTGTTGGACATGTTTTACTCCAATTGAATTCAGTGGATACCAAAAGGTCAAGGTGTATCATATTTGCTGATGATCTCTTTCAATTATCTAAAAATGCCACACAGAAGACAATNTACGCTATTGGTAAAGCTGTTGAGAATATGCCTGGATATCGGGCCCCAAAGCACATGGATCTTTGNCCGTATATTGTTTCAAAAGTGCCCAGCCTAAGGCTTCATGAGAAATCAACAAACCAACAAAATGGAGCATCTATATTGAAAACTCTCTCTTCCGTTATGCTTACATTACAAAGATATGAATTTAAAACCAATCATGAAGAATGGGTTAAATCAGTCAAANGCAGGTTAAGCCGTGGTGTGCCTGATCGTGTTATTGCAGCCATTAATACTACACATGATAACATAAAAGCCTTATATAAAGTCAGGACTGAGATGCGAGGTGCACTTCAAACTCTGTTAAAGGATGATGGAATACTAGTTATTCCCTCTGTAGCAGACAGTCCATTAAAGCTTAATACAAAGAAAAGTTTTTCTTCNGGGTTCCATGACAGAACTGTTGCATTATCCAGCATTGCTACTATGTCTGGATGTTGTCAGGCTACAATTCCATTAGGATATCATGATGATTGTTGTATTTCTGTTTCATTCATTTCATTCCATGGAGCTGATAAATTTCTTCTGGATATGGTCTTGGATATGTATACAACTCTTCAAGAGCAAGTTAGTGTTGGGTCCTATTCCTGGCCATTACCAGATATCAATGGCAACGGGGAAACCTCTGAACATTTAAAGGAGAAGGGAAATGCAGCATTTAAAGAAAAGCAATGGAATAAGGCAGTCGATTACTATACAGAGGCTATCAATTTGGATGGGATGAATGCAACTTACTACTGCAACCGAGCAGCTGCTTACTTAAAGTTAGGATGCTTTCAGCAAGCGGCAGAAGACTGCAGTAAGGCAATATCGCTNGATAAGAAGAATGTGAAGGCATATCTGAGACGTGGAACTGCTAGAGAATCACTACTACAGTATAAGGAGGCTCTTGAAGATTTCAAGCATGCTCTTATTCTTGAACCACAGAACAAGGATGCTAGTCTTGCTGAGAAAAGAGTAAGAAAATTGATGAGATGAGTGTGCTTTTTCTCCCGTGACCCGAAAATCAATTAGCTGTGGAAATGTACGATTTTGGTTCTTTTTTTTTTTTACACCGACTACCTTAAGAGTAAAGGCAAATTGAAGGGAGAGAAGAGATAAACCTCTGTTGATGAGGTGCTGCATTGTTCCCATTTTGTGCATATCATGTCAGAGATCTTATTCAACCCGATTTGATTATGCCTATAATTTTGGATCTACATATATGTCATAAGATTGGCCTCGTAGCCCCTGTACATTTTAAAGTGCATGGTGCAGCATATTTACTTTGCTTTAGGTGTTGCACATAATAAGAATTTATAAGAATAGAGAACATTTTTCTAGAATTGGAATATTTGGATCATTTTTGAATTTTACTATTGACTTAGTCATGCCATTAACTATCAACGGGAGATGCTCATGGCATTTCCTGAACTCAGGATAGTTTGATTGTCGTGATCTTTGCAGGGTTTGGATGAAACTATAAGTCAAGGCAGCAGTTACCTCTTTCCCACTTAAGGCCTATCTATACCAATTCAACCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01503	19042	25121	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001503s00028860.1	PF01425.16	Amidase	68	454	3.00E-60
Glyur001503s00028860.1	PF13414.1	TPR_11	486	552	1.40E-19
Glyur001503s00028860.1	PF00515.23	TPR_1	555	588	1.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.139
SRR1783600	control	6.330
SRR1783602	moderate drought stress	9.459
SRR1811619	moderate drought stress	9.507

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.657
DRR006520	Root Summer glycyrrhizin high producing strain	9.460
DRR006521	Root Winter glycyrrhizin high producing strain	7.212
DRR006522	Root Winter glycyrrhizin high producing strain	7.222
DRR006523	Root Summer glycyrrhizin low producing strain	14.335
DRR006524	Root Summer glycyrrhizin low producing strain	14.418
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.116
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.994

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.203
SRR2868004	Drought Stress (root)	8.984
SRR2967015	Control (root)	9.638

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.588
SRR9715740	Leaf	5.994
SRR9715741	Leaf	5.775
SRR9715739	Root	3.642
SRR9715742	Root	12.839
SRR9715743	Root	10.958

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.892
SRR8749028	MeJA induced 9h	16.233
SRR8749029	MeJA induced 9h	27.590
SRR8749030	Uninduced	3.469
SRR8749031	Uninduced	3.428
SRR8749032	Uninduced	4.935

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.644
SRR8400027	Control - Root	13.801