Gene detail

Gene detail information of Glyur001503s00028859

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02170.1	9.00E-63	metacaspase 1
NR	XP_006584978.1	0	PREDICTED: metacaspase-1-like isoform X1 [Glycine max]
COG	YP_003847815.1	6.00E-25	peptidase C14 caspase catalytic subunit p20 [Gallionella capsiferriformans ES-2]
Swissprot	tr\|Q7XJE6\|MCA1_ARATH	1.00E-73	Metacaspase-1
trEMBL	tr\|K7L5D3\|K7L5D3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G07640.2}

Sequence

Transcript Sequence

>Glyur001503s00028859.1
CGTTAAGGTAAGTGCATGTACAAAGGGGAAAGCTGGGAGCCTAGTCTATGTGCCTACAAAATCTGCATTATATATTTTGATGCTGCCAACTTCATGCTTGGCATACAGGGAAAACCATACTGCAAACAATGGAAGCTACATCTAAATACAGAAGGTACAGAAAGGGTGTTTCATCTCCTACAAGCACTACTACTACTATGCATGGTTGCTATGCTTGCAAAAATGTTTCCAGTTCTCATCATCCTAGTGGGGAAGCAAAACCATCCAGCATAGGTTGTTGTTGTTGCTTTTTATGCCATAGTGTAATTAGTAATCCAACTTTGGGACATGACAAATCAAGGGAACATTTTTGTGGAATGTGTCGTCCAGTGAAGAAAATTGGAACCAAATTGTTCAAACTTGGTCATCTTGACAATTCTAACAATAAAAATGGAAACTTGCTGGGTAGGTCACCATCTCCTTCAATGGCCTTTCCCTCATCGATATCCTTGCCCAGTAGATATAACAAGCGTGCGGTTCTCTGTGGAGTTTCTTACACAAAAAGGAAATTCAGGCTCAAGGGAACNATTAATGACATTGCTAACATGAGGGAGCTTCTTGTTAAGAATTTTAAGTTCCCAAATGAGTGCATAAGAGTCCTCACAGAACAAGAGCAGAATGCCAATTTGATACCAACGAAACACAACATATTGGAGTCATTAAGGTGGCTTGTGAAGGACTGTGAGGCAGGGGACTCATTGGTGTTTTACTTCTCGGGGCACGGTTTGCAACAACCAGATTTCAAGGAAGATGAAATCGATGGGTTTGATGAGACTCTCTGTCCTGTTGATTTCATGAAAGAAGGAATGATCATTGACAATGACATAAATTCCACCATTGTTTGGCCACTCAAGAAAGGTGTCAAACTTCATGCTATTGTTGATGCTTGTCATAGTGGAACGATTCTTGATCTTTTGTACGTCTATAACTATAAAAGTGGCATTTGGGAAGATAACAAGCCTCCTTCAAGAGAACCTATTAGAAAACACACAAGTGGTGGAGTTGCTATTTGTCTCAGTGCTTGTGAAGATAGCCAGACGGCTACTGATAGCGCAGTTTTTGGTGGAAAGGGAATGAATGGTGTTCTGACTTATCTTTTCACAAAAACAATCAGAGAATACCCTGGAATAACTTATGGCCGTCTACTGGAAAAGATGCATGACGAAATNAAAAAGATTAACCGAACCAGATGCAATAAACGCATCTTGCAACACATCTTCCATCGTAAAATTGTACAGGATGCTCTTTTATCATCATCTGAGAAATTTGATGTTTCTACGACAATATTCACNTTGTGAATGAGCACTGTGTAAGTTGAAAAAGACAATCCTGTGGTGGGTTCATTGGCTGCAAGGCATTGAATTGCGTATACATCTCCGATTGCTATATTTTTCTGATGATCATTTGGAACTGGACAGACAAGACAGAACTTGTAGTATNTCTTTTGATTAATCTGAATCAGTATTTGTAATCAAATTCTAATTAAGCGTAACATCAATAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01503	13382	16036	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004197 cysteine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001503s00028859.1	PF00656.17	Peptidase_C14	127	364	2.20E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.651
SRR1783600	control	1.722
SRR1783602	moderate drought stress	0.320
SRR1811619	moderate drought stress	0.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.810
DRR006520	Root Summer glycyrrhizin high producing strain	2.767
DRR006521	Root Winter glycyrrhizin high producing strain	3.017
DRR006522	Root Winter glycyrrhizin high producing strain	2.710
DRR006523	Root Summer glycyrrhizin low producing strain	8.767
DRR006524	Root Summer glycyrrhizin low producing strain	8.861
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.325
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.250

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.397
SRR2868004	Drought Stress (root)	2.751
SRR2967015	Control (root)	1.363

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.713
SRR9715740	Leaf	0.200
SRR9715741	Leaf	0.497
SRR9715739	Root	0.032
SRR9715742	Root	0.160
SRR9715743	Root	0.212

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.659
SRR8749028	MeJA induced 9h	3.156
SRR8749029	MeJA induced 9h	5.206
SRR8749030	Uninduced	0.705
SRR8749031	Uninduced	0.760
SRR8749032	Uninduced	0.313

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.862
SRR8400027	Control - Root	1.549