Gene detail

Gene detail information of Glyur001502s00031891

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G16370.1	oligopeptide transporter
NR	XP_004507597.1	PREDICTED: oligopeptide transporter 3-like [Cicer arietinum]
Swissprot	tr\|O23482\|OPT3_ARATH	Oligopeptide transporter 3
trEMBL	tr\|A0A072UUB8\|A0A072UUB8_MEDTR	Oligopeptide transporter OPT family protein {ECO:0000313\|EMBL:KEH32683.1}

Sequence

Transcript Sequence

>Glyur001502s00031891.1
ATGGCGCCAAAGAACAGTACGGACACCGAGAAAGCGACAAACGGAGGAGGAGCTCCTCCTCCCGATGACGAGAGGTGTCCGGTCGAGGAGGTTGCCCTGGTGGTGCCGGAAACCGACGACCCGTCACTTCCGGTGATGACTTTCCGGGCATGGTTTCTGGGGATAAGTTCCTGCGTGCTCCTAATCTTCCTCAACACCTTCTTCACGTTTCGGACTCAGCCACTCACCATCTCCGCCATTCTGATGCAAATCGCCGTGCTCCCCGTCGGAAGGTTCATGGCGGCGGTGCTTCCCACGAAGGAGTACGGTGTTCTCGGGTGGCGCTTCACACTGAATCCGGGTCCCTTCAATATGAAGGAACACGTCATCATCACCATCTTCGCTAACTGTGGTGTGTCCTTTGGAGGAGGTGATGCTTACTCCATTGGTGCCATTACTGTCATGAAGGCTTATTATAAGCAGACCCTCAGCTTTCTCTGTGCCCTCTTCATCGTCTTAACTACACAGGTATTGGGGTATGGATGGGCTGGTATTCTGAGGAGGTATCTGGTTGATCCCGTTGAAATGTGGTGGCCAGCAAACCTTGCTCAAGTCTCTCTCTTTAGGGCACTCCATGAAAAAGAGCACAAAACGAAAGGTTTCACAAGGATGCAGTTTTTCCTCATTGCCATGGGTCTAAGCTTCTTGTATTATGCACTCCCAGGCTATCTTTTCACCATCTTAACATTCTTCTCCTGGATATGCTGGGCATGGCCCCATAATATCACAGCACAGCAAATTGGGTCAGGTTATCATGGACTNGGGATTGGTGCCTTCACACTTGATTGGGCTGGGATTTCAGCTTATCATGGGAGCCCCCTTGTTGCACCATGGTCTTCCATAGTTAATGTGGGAATTGGATTCATCATGTTCATCTACATAATTGTACCTGTGTGTTACTGGAAGTTTAACACTTTTGATGCTCGGAAGTTTCCTATATTCTCTAACCAGTTGTTCACGTCCCGTGGACTAAAGTATGACACTACCAAGATCTTAACCCCGGAATATGATCTTAACATTGATGCATACAACAAATATGGCAAGTTATACCTTAGTCCTCTGTTCGCATTATCTATTGGGTCAGGTTTTGCAAGATTCACGGCAACCCTCACTCATGTAGCACTGTTTCACGGCAGAGACATATTGAGACAAAGCAGATCAGCAATGGGTAATGCAAAATTGGATGTCCATGGTAGACTCATGAAAGCTTATAAGCAAGTACCAGAATGGTGGTTCATTATTTTACTATTTGGGAGCATGGCTCTATCAGTGGTGATGGCTTTTGTGTGGAAATCGGATGTGCAACTGCCATGGTGGGGTATGCTCTTTGCTTTTGGCTTAGCTTTTGTTGTAACCCTCCCAATTGGTGTCATCCAAGCAACTACCAACCAGCAACCTGGATATGACATAATAGCACAGTTCATGATTGGGTATATTCTTCCTGGAAAACCAATTGCAAACTTGCTCTTTAAGATCTATGGGAGAATCAGCACCGTCCATGCTCTCTCTTTCTTGTCAGATCTCAAACTTGGGCACTACATGAAAATTCCTCCACGATGCATTTTGATTACATCAGTAACCTTATGCTACAGGGCACTCCATGAAAAAGAGCACAAAACGAAAGGTTTCACAAGGATGCAGTTTTTCCTCATTGCCATGGGTCTAAGCTTCTTGTATTATGCACTCCCAGGCTATCTTTTCACCATCTTAACATTCTTCTCCTGGATATGCTGGGCATGGCCCCATAATATCACAGCACAGCAAATTGGGTCAGGTTATCATGGACTTGGGATTGGTGCCTTCACACTTGATTGGGCTGGGATTTCAGCTTATCATGGGAGCCCCCTTGTTGCACCATGGTCTTCCATAGTTAATGTGGGAATTGGATTCATCATGTTCATCTACATAATTGTACCTGTGTGTTACTGGAAGTTTAACACTTTTGATGCTCGGAAGTTTCCTATATTCTCTAACCAGTTGTTCACGTCCCGTGGACTAAAGTATGACACTACCAAGATCTTAACCCCGGAATATGATCTTAACATTGATGCATACAACAAATATGGCAAGTTATACCTTAGTCCTCTGTTCGCATTATCTATTGGGTCAGGTTTTGCAAGATTCACGGCAACCCTCACTCATGTAGCACTGTTTCACGGCAGAGACATATTGAGACAAAGCAGATCAGCAATGGGTAATGCAAAATTGGATGTCCATGGTAGACTCATGAAAGCTTATAAGCAAGTACCAGAATGGTGGTTCATTATTTTACTATTTGGGAGCATGGCTCTATCAGTGGTGATGGCTTTTGTGTGGAAATCGGATGTGCAACTGCCATGGTGGGGTATGCTCTTTGCTTTTGGCTTAGCTTTTGTTGTAACCCTCCCAATTGGTGTCATCCAAGCAACTACCAACCAGCAACCTGGATATGACATAATAGCACAGTTCATGATTGGGTATATTCTTCCTGGAAAACCAATTGCAAACTTGCTCTTTAAGATCTATGGGAGAATCAGCACCGTCCATGCTCTCTCTTTCTTGTCAGATCTCAAACTTGGGCACTACATGAAAATTCCTCCACGATGCATGTATACAGCTCAGCTGGTGGGAACTNTAGTTGCTGGAGTAGTGAACCTTGCAGTGGCTTGGTGGATGTTGGATAGCATTAAGGACATTTGCATGGATGATAAAGCTCATCATGACAGCCCATGGACTTGCCCCAAATACAGAGTGACCTTTGATGCATCAGTCATATGGGGTCTGATTGGACCAANGCGGCTATTTGGGCCTGGTGGGCTATACAGGAACCTGGTTTGGTTATTCCTGATTGGAGCTTTTTTGCCAGTTCCTGTTTGGGTAATGAGCAAAATCTTCCCTGACAAGANATGGATCCCATTGATAAACATACCAGTTATATCCTATGGCTTTGCTGGAATGCCACCTGCAACCCCCACCAACATTGCAAGCTGGCTAATCACTGGGATGNTCTTCAATTACTTTGTGTTCCGCTACCACAAACGTTGGTGGCAGAAATATAACTATGTTCTATCAGCAGCACTGGATGCAGGCACGGCTTTCATGGGTGTTCTGATTTTCTTTGCCCTGCAAAATGCAGGCCATACTCTCAAATGGTGGGGAACTGAATTGGACCATTGCCCATTGGCTACATGCCCAACCGCACCAGGAATTGAGGTTGAAGGTTGTCCAGTATTCCGCTAGAGAAGCCTAATGAATGGGCTTAGCTTTTCTTCTTCTTTTTTCTTGGTTTTTGTTTTTGGGTGGGAACCAAGTTAGGCTTGGGATATAGGTGAAGGGACCAAATAACCAATTGCTTAGCAATTATAATTATGTACATGCTTGCTTGTTATCGTGAAAGGGTTTTCCTTTTTGTTCTTTTACCAACGCCATTTCATTTGCCTGATAACTAATAAGTATATGCAGTTCATTGGT

Protein Sequence

>Glyur001502s00031891.1
MAPKNSTDTEKATNGGGAPPPDDERCPVEEVALVVPETDDPSLPVMTFRAWFLGISSCVLLIFLNTFFTFRTQPLTISAILMQIAVLPVGRFMAAVLPTKEYGVLGWRFTLNPGPFNMKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQTLSFLCALFIVLTTQVLGYGWAGILRRYLVDPVEMWWPANLAQVSLFRALHEKEHKTKGFTRMQFFLIAMGLSFLYYALPGYLFTILTFFSWICWAWPHNITAQQIGSGYHGLGIGAFTLDWAGISAYHGSPLVAPWSSIVNVGIGFIMFIYIIVPVCYWKFNTFDARKFPIFSNQLFTSRGLKYDTTKILTPEYDLNIDAYNKYGKLYLSPLFALSIGSGFARFTATLTHVALFHGRDILRQSRSAMGNAKLDVHGRLMKAYKQVPEWWFIILLFGSMALSVVMAFVWKSDVQLPWWGMLFAFGLAFVVTLPIGVIQATTNQQPGYDIIAQFMIGYILPGKPIANLLFKIYGRISTVHALSFLSDLKLGHYMKIPPRCILITSVTLCYRALHEKEHKTKGFTRMQFFLIAMGLSFLYYALPGYLFTILTFFSWICWAWPHNITAQQIGSGYHGLGIGAFTLDWAGISAYHGSPLVAPWSSIVNVGIGFIMFIYIIVPVCYWKFNTFDARKFPIFSNQLFTSRGLKYDTTKILTPEYDLNIDAYNKYGKLYLSPLFALSIGSGFARFTATLTHVALFHGRDILRQSRSAMGNAKLDVHGRLMKAYKQVPEWWFIILLFGSMALSVVMAFVWKSDVQLPWWGMLFAFGLAFVVTLPIGVIQATTNQQPGYDIIAQFMIGYILPGKPIANLLFKIYGRISTVHALSFLSDLKLGHYMKIPPRCMYTAQLVGTXVAGVVNLAVAWWMLDSIKDICMDDKAHHDSPWTCPKYRVTFDASVIWGLIGPXRLFGPGGLYRNLVWLFLIGAFLPVPVWVMSKIFPDKXWIPLINIPVISYGFAGMPPATPTNIASWLITGMXFNYFVFRYHKRWWQKYNYVLSAALDAGTAFMGVLIFFALQNAGHTLKWWGTELDHCPLATCPTAPGIEVEGCPVFR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01502	31103	38151	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001502s00031891.1	PF03169.10	OPT	46	537	2.60E-132
Glyur001502s00031891.1	PF03169.10	OPT	542	1047	2.00E-133
Glyur001502s00031891.2	PF03169.10	OPT	46	536	2.40E-132
Glyur001502s00031891.2	PF03169.10	OPT	542	819	3.50E-62
Glyur001502s00031891.2	PF03169.10	OPT	819	986	2.00E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.869
SRR1783600	control	20.867
SRR1783602	moderate drought stress	20.715
SRR1811619	moderate drought stress	20.839

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.317
DRR006520	Root Summer glycyrrhizin high producing strain	66.690
DRR006521	Root Winter glycyrrhizin high producing strain	2.517
DRR006522	Root Winter glycyrrhizin high producing strain	2.501
DRR006523	Root Summer glycyrrhizin low producing strain	66.767
DRR006524	Root Summer glycyrrhizin low producing strain	66.319
DRR006525	Leaf Summer glycyrrhizin high producing strain	64.953
DRR006526	Leaf Summer glycyrrhizin high producing strain	63.174

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.545
SRR2868004	Drought Stress (root)	15.487
SRR2967015	Control (root)	10.757

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	57.710
SRR9715740	Leaf	60.413
SRR9715741	Leaf	83.358
SRR9715739	Root	34.553
SRR9715742	Root	63.188
SRR9715743	Root	57.545

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.536
SRR8749028	MeJA induced 9h	4.680
SRR8749029	MeJA induced 9h	0.729
SRR8749030	Uninduced	3.129
SRR8749031	Uninduced	0.985
SRR8749032	Uninduced	0.976

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.442
SRR8400027	Control - Root	22.402