Gene detail

Gene detail information of Glyur001502s00031890.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16360.3	3.00E-86	5'-AMP-activated protein kinase beta-2 subunit protein
NR	XP_004507596.1	7.86E-130	PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cicer arietinum]
Swissprot	tr\|Q9SCY5\|KINB2_ARATH	4.00E-108	SNF1-related protein kinase regulatory subunit beta-2
trEMBL	tr\|V7BSR3\|V7BSR3_PHAVU	7.00E-123	Uncharacterized protein {ECO:0000313\|EMBL:ESW19611.1}

Sequence

Transcript Sequence

>Glyur001502s00031890.1
GTTTGGAAGTATAATGGAAATGTGAACTAAATGGCCAATGGGGTAAATTGGGAAAGGTGGATGGGAAGGAAAAGGAGTGGGGGCGATGGGAATGGGAATGGGAATGGGAAGAAAGAACGAAAGGGACAGATTATGATATGAGGGAAGAAGAGGAAAGCAAATATGCAATGCAACAGAAACAATTAAAANAAAGAAAGAGAAAGAGGTGATGCTGCTGCTGCTGCTGCTGCTCNTCCCCATCCCTGCAATGCTCAGTGCTTCTTCTTAAAAAGTTGAAATTTGTATCCTTACTACTATTTATTCATTCACAACACAATCCCTCGACCTCAACGATGGGGAATGTGAATGGAAATCCTTCCAAAGAAGAAGCTTCAGCCACTGTGCCTCTCGATGGTGATGGAGTTGGGAACGCGATGATGGCTCACTCTCCCCCCACCAGCCCTAGAGCTTCCCATTCTCCTCTCATCTTCACTCCTCAAGTCCCGGTGGTTCCTTTACAAAGACCTGATGAGATGCATGCTCCGAGCAATTCCTGGATTATGCAAACTACTTCAGGGTATGAAGATATGTACAGTGAACACGGAATCCCAACAATGATTACTTGGGGTTATGNTGGAAAGGAAATATCTGTAGAGGGGTCGTGGGATAATTGGAAAACAAGAACGCCCTTGCAGAAATCAGGGAAAGACTTCACAATAATGAAGGTACTGCCGTCTGGTGTTTACCAGTACAGGTTTGTTGATTATGTTCCTGAAGACATTGGAAGCATTTCTGGTTTTGAACCTCCTCAATCACCAGACTCAAGTTATAACAACTCACAACTTAGTTCTGANGATTATGCAAAGGAGCCACNGTTAGTTCCTCCGCACTTGCAAATGACACAGCTAAATGTGCGTACAACAAATATGGNAATCCAACCTCCTATCTCAAGACCTCAACATGGAGTGCTCAATCATCTTTATATGCAGAAAGGAAAAAGCAGTCCTTCAGTGGTTGCCCTTGGTACAACTCATCGGTTTCTAGCCAAATATGTCACCGTGGTGCTTTACAAGTCTTTGCAGAGGTAAATCGTAAACATAAGTGACATGGATCATAGTCATTAACGCCTTCTATGTAGTATAGTTACAAGAGAGAAAATGGGAAGCTACATAAGGATCACTACACGAAAATGCAATTGCTTGATGGCCAATTATCAGATGATTTAGTTCCAATTATTACATATTTGGTGATGCTTTTCTCTAGGAATTTTGAATGAGTGATCAAAAGGATAAAAATAATGTACGGCGTGTTCTTCTTATATATGCAATTTGGTGGTTAAGCTATTTTGCAGTTAATATCCACCATATATGCAATTTGGTTTTTTGTTGCGGGTTTCAGCATGTATTGGAGATACTTGAGATTCATTTTCCTGTAAATTGACTTTTGTTGGTATAAGGTAGCCCTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01502	25931	30198	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001502s00031890.1	PF04739.10	AMPKBI	165	241	1.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.889
SRR1783600	control	11.863
SRR1783602	moderate drought stress	13.773
SRR1811619	moderate drought stress	13.748

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.249
DRR006520	Root Summer glycyrrhizin high producing strain	36.810
DRR006521	Root Winter glycyrrhizin high producing strain	105.593
DRR006522	Root Winter glycyrrhizin high producing strain	101.285
DRR006523	Root Summer glycyrrhizin low producing strain	20.806
DRR006524	Root Summer glycyrrhizin low producing strain	20.061
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.204
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.999

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.680
SRR2868004	Drought Stress (root)	11.160
SRR2967015	Control (root)	11.936

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.321
SRR9715740	Leaf	11.036
SRR9715741	Leaf	12.124
SRR9715739	Root	5.815
SRR9715742	Root	7.318
SRR9715743	Root	7.664

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.025
SRR8749028	MeJA induced 9h	7.146
SRR8749029	MeJA induced 9h	5.937
SRR8749030	Uninduced	6.424
SRR8749031	Uninduced	9.632
SRR8749032	Uninduced	6.410

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.994
SRR8400027	Control - Root	12.503