Gene detail information of Glyur001502s00031889 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47630.2 | 8.00E-32 | mitochondrial acyl carrier protein 3 |
| NR | XP_004507595.1 | 2.10E-72 | PREDICTED: acyl carrier protein 3, mitochondrial-like [Cicer arietinum] |
| COG | YP_006440901.1 | 4.00E-16 | Acyl carrier protein [Turneriella parva DSM 21527] |
| Swissprot | tr|Q9FGJ4|ACPM3_ARATH | 4.00E-39 | Acyl carrier protein 3, mitochondrial (Precursor) |
| trEMBL | tr|I3SYT2|I3SYT2_MEDTR | 1.00E-67 | Acyl carrier protein {ECO:0000256|RuleBase:RU000722} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01502 | 21279 | 24812 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001502s00031889.1 | PF00550.20 | PP-binding | 101 | 167 | 7.90E-10 |
| Glyur001502s00031889.2 | PF00550.20 | PP-binding | 50 | 116 | 3.60E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.132 |
| SRR1783600 | control | 8.296 |
| SRR1783602 | moderate drought stress | 7.429 |
| SRR1811619 | moderate drought stress | 7.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.903 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.853 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.081 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.031 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.210 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.070 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.786 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.614 |
| SRR2868004 | Drought Stress (root) | 14.243 |
| SRR2967015 | Control (root) | 13.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.394 |
| SRR9715740 | Leaf | 2.521 |
| SRR9715741 | Leaf | 2.309 |
| SRR9715739 | Root | 3.335 |
| SRR9715742 | Root | 3.913 |
| SRR9715743 | Root | 3.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.574 |
| SRR8749028 | MeJA induced 9h | 2.261 |
| SRR8749029 | MeJA induced 9h | 5.018 |
| SRR8749030 | Uninduced | 2.451 |
| SRR8749031 | Uninduced | 5.677 |
| SRR8749032 | Uninduced | 3.986 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.517 |
| SRR8400027 | Control - Root | 19.646 |