Gene detail information of Glyur001502s00031887.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14540.1 | 7.00E-44 | nuclear factor Y, subunit B3 |
| NR | XP_007154047.1 | 2.17E-58 | hypothetical protein PHAVU_003G086800g [Phaseolus vulgaris] |
| Swissprot | tr|O23310|NFYB3_ARATH | 8.00E-56 | Nuclear transcription factor Y subunit B-3 |
| trEMBL | tr|V7CAV7|V7CAV7_PHAVU | 8.00E-59 | Uncharacterized protein {ECO:0000313|EMBL:ESW26041.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01502 | 16403 | 16954 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001502s00031887.1 | PF00808.18 | CBFD_NFYB_HMF | 21 | 85 | 4.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 71.780 |
| SRR1783600 | control | 72.035 |
| SRR1783602 | moderate drought stress | 121.231 |
| SRR1811619 | moderate drought stress | 120.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 416.958 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 408.823 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 252.514 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 241.401 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 384.876 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 386.992 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.789 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 81.638 |
| SRR2868004 | Drought Stress (root) | 167.936 |
| SRR2967015 | Control (root) | 142.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.468 |
| SRR9715740 | Leaf | 39.615 |
| SRR9715741 | Leaf | 34.322 |
| SRR9715739 | Root | 89.197 |
| SRR9715742 | Root | 95.899 |
| SRR9715743 | Root | 93.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.695 |
| SRR8749028 | MeJA induced 9h | 21.384 |
| SRR8749029 | MeJA induced 9h | 17.706 |
| SRR8749030 | Uninduced | 16.164 |
| SRR8749031 | Uninduced | 7.242 |
| SRR8749032 | Uninduced | 4.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 80.071 |
| SRR8400027 | Control - Root | 75.232 |