Gene detail

Gene detail information of Glyur001502s00031886

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47650.1	3.00E-90	nudix hydrolase homolog 2
NR	AFK40742.1	4.80E-173	unknown [Lotus japonicus]
COG	YP_944432.1	2.00E-45	ADP-ribose pyrophosphatase [Psychromonas ingrahamii 37]
Swissprot	tr\|Q94B74\|NUDT2_ARATH	1.00E-111	Nudix hydrolase 2
trEMBL	tr\|I3SKF0\|I3SKF0_LOTJA	2.00E-173	Uncharacterized protein {ECO:0000313\|EMBL:AFK40742.1}

Sequence

Transcript Sequence

>Glyur001502s00031886.1
ATGTTTCGAGGGACGCAAAGCAAAGCAAAGGCAAAGGCAAAGGCAAGGGCAAGGCAAGCTGTTATTCCTCAATCCTCGTCTCCATTATCCCAACTCAAGGTTAGAGTGGCAACCCCTGTTCCTACTGCAGTACAAATGACTGCAGAAGATCAGGTGCAACAGATTGAACTACTAACATCAACCGATGATGATTATGGNGGTGTTATTGTGGAAATGGATGAGCCTATGGATTCTACAGCCTTTGTATCCATTCTCAGAGCTTCAATTTCACACTGGAAACAGCTGGGCAAGAAGGGCGTTTGGATAAAATTAGCTATTCATCTAGCCAGCCTTGTTGAAGCTTTAGTCAAGGAAGGTTTTTTATATCACCATGCAGAATCGAAATATTTGATGCTTGTACGTTGGATTGCGGACAGTGCAAGCACTATTCCAGCAAATGCCACACACCGAGCNGGTGTTGGTGCACTTGTCGTGAATGAAAAACAAGAGGTTCTAGTGGTTCAAGAAAAAAGTGGACATTTTCAGGGAACTGGAGCCTGGAAATTCCCTACTGGAGTTGTTGATCAGGGAGAAGATATTTGTGCAGCAGCAGTAAGAGAGGTCAAAGAAGAAACAGGAGTTGACTCAGAATTTGTGGAAGTATTAGCATTCAGACAAAGTCACATGTCATTCTTTGAGAAGTCAGATCTATTCTTTGTGTGCTTGTTGCGCCCACTTTCCTCTGACATCCAAATACAGGAGTTAGAGATAGAGGCTGCCCAGTGGATGCCATTTGATGAATATGCAGCTCAGCCATTTATGGAGAAGTATGAGATATTGAGGTATGTCAGTGATATATACTTGGCAAAAATCGATGGACGATATTCTGGATTTACTCCTGTACCTACAACATCAAACTCCTCTGAGCAAAAGAGCTACCTTTACTTANATGCTGGAGGCCTCAAGAGTGAAGAGGTGTAATGTAATTTTTTATAAGCATCAGCCAAGGACTACAATCTTAGCAACTTAGTATTATTTTATTTATTGTAATTGTGAGAACATTCTCAATGCTTATTTTCTTTAATTTCTATAGTCGTAACTCACAAGTATCTAACCGGAGAGAATGAAATGGCCAACACTTTCTGGAGCCATTCATTCCCTTCCTTGACCCAATCAATACAGCTCAGCTCCCTGATATGAATATGAGATGGTTCCTGTTTGAACTCAAACCAATTAAATTCTAGCTATAATGTCACTGTCTCCTTTTACACCTGCACATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01502	10584	15157	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001502s00031886.1	PF00293.23	NUDIX	149	266	6.70E-22
Glyur001502s00031886.2	PF00293.23	NUDIX	19	136	1.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.075
SRR1783600	control	5.217
SRR1783602	moderate drought stress	6.380
SRR1811619	moderate drought stress	6.328

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.130
DRR006520	Root Summer glycyrrhizin high producing strain	7.716
DRR006521	Root Winter glycyrrhizin high producing strain	8.270
DRR006522	Root Winter glycyrrhizin high producing strain	8.091
DRR006523	Root Summer glycyrrhizin low producing strain	6.662
DRR006524	Root Summer glycyrrhizin low producing strain	6.446
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.685
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.306

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.131
SRR2868004	Drought Stress (root)	8.588
SRR2967015	Control (root)	9.068

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.976
SRR9715740	Leaf	29.297
SRR9715741	Leaf	18.666
SRR9715739	Root	2.364
SRR9715742	Root	3.935
SRR9715743	Root	4.429

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.994
SRR8749028	MeJA induced 9h	14.888
SRR8749029	MeJA induced 9h	12.851
SRR8749030	Uninduced	46.705
SRR8749031	Uninduced	38.194
SRR8749032	Uninduced	33.731

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.908
SRR8400027	Control - Root	13.210