Gene detail

Gene detail information of Glyur001500s00038264

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03880.1	1.00E-93	Thioredoxin family protein
NR	XP_006594219.1	1.49E-153	PREDICTED: uncharacterized protein LOC100792004 isoform X2 [Glycine max]
COG	YP_693288.1	4.00E-42	hypothetical protein ABO_1568 [Alcanivorax borkumensis SK2]
trEMBL	tr\|I1J454\|I1J454_SOYBN	2.00E-153	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA0084S00210.1}

Sequence

Transcript Sequence

>Glyur001500s00038264.1
CGTTGGTGGTGATTGGCCAAACAAATTGCAATCAATCAAAGCATTGGCCATTTCCCCACACAAAACCAAAACACAAACTCAGTTCACCTCCCAAACAAGAACAACAGTGCTGAGGAAGCTTGTCCCTTTTACCAACAAGGTTATGGCCATGGCTGTTGGAGGAGCTCTTACTACTCTCTCCCAATTCTCAGTTTATAAGCCAATTTCATTGCCCACAAAACTACCCAGAAGAAACAGGGTGTACATTAGAGCCATGTCAGAAACCACCTCTTCANCTTCCACTTCCAATTCTGTTAGCACCACCACCCAGCAACAACAAGAGCCAGTATCAGATTCTCCAGCTTCGTCCACGTCATCATTTTCTCCTCCCCTTAATTTCAAACCCCCTGAACCCAAACGCTTTGCTGTGAGACCTGACAAGACTGGTGAAATGTTTGGAGCTTTGCTTCCTTTGGTCTTTCGCTTTGCTACTGGAGTCTTCGTTTCTGGGTATTCTTTTTCATTTGTTTCTAAGGATGAGATTCCACCAAATGAATATGCTCTGCAAATTTCTGGCACTGTGGTAAAGGAAACATCAAAGTTAGGTCCTCGACCAGAGAAGCCAATTGAGATATATGAATTTGAGAGCTGTCCATTTTGTCGAAAGGTTAGAGAAATTGTTGCTATTTTGGACCTTGATGTTCTTTTCTATCCATGCCCAAGAAATGGCCCAAATTTCCGTGCAAAGGTTGTTCAGATGGGCGGTAAAACGCAGTTCCCTTACATGGTTGACCCAAATACAGGCGTTTCGATGTATGAATCAGATGACATAATTCGGTATTTGGTTGGCAAATATGGTGATGGAAGTGTTCCTTTTACTTTGTCACTTGGATTTTTAACGGGGTCTCCTTTCTGCAAACTTGTACGTGAAGTACTTGTGGAAATGGAGCTGCCACACCTGCTTATCAGTTGTGCTAGGGGTAGCCCAAAACGACATATACTATATCAGAAAACCGGACATTTCCAGGCACCCTTTTTGGAAGATCCAAACACTGGGATAGAAATGTTTGAGAGTGCAGAAATTATAGAGTATCTCAGAGCAACTTACGCTCTTCAATGAGTGTGATGTTATGACTTATTAGAGTCTTAGGAGGGTTTTTAACTCAATGTGATTACTCTTGTATAAAAGTTAAATTGGTTCTAACACTGAGGTAAATCAATTTGTTACTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01500	52476	61864	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0045454 cell redox homeostasis

molecular_function

GO:0005515 protein binding

GO:0009055 electron carrier activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001500s00038264.1	PF13417.1	GST_N_3	158	233	2.20E-10
Glyur001500s00038264.1	PF13417.1	GST_N_3	246	316	6.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.086
SRR1783600	control	36.077
SRR1783602	moderate drought stress	46.032
SRR1811619	moderate drought stress	45.891

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	67.587
DRR006520	Root Summer glycyrrhizin high producing strain	70.720
DRR006521	Root Winter glycyrrhizin high producing strain	27.838
DRR006522	Root Winter glycyrrhizin high producing strain	27.075
DRR006523	Root Summer glycyrrhizin low producing strain	48.784
DRR006524	Root Summer glycyrrhizin low producing strain	44.050
DRR006525	Leaf Summer glycyrrhizin high producing strain	333.967
DRR006526	Leaf Summer glycyrrhizin high producing strain	333.894

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.603
SRR2868004	Drought Stress (root)	30.024
SRR2967015	Control (root)	35.738

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	95.062
SRR9715740	Leaf	237.754
SRR9715741	Leaf	97.248
SRR9715739	Root	6.567
SRR9715742	Root	10.243
SRR9715743	Root	8.345

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.388
SRR8749028	MeJA induced 9h	42.231
SRR8749029	MeJA induced 9h	27.100
SRR8749030	Uninduced	38.252
SRR8749031	Uninduced	28.023
SRR8749032	Uninduced	15.568

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.208
SRR8400027	Control - Root	38.696