Gene detail information of Glyur001499s00040544 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_010320499.1 | 2.01E-29 | PREDICTED: extensin, partial [Solanum lycopersicum] |
| Swissprot | tr|Q9FS16|EXTN3_ARATH | 1.00E-09 | Extensin-3 (Precursor) |
| trEMBL | tr|M0ZJJ1|M0ZJJ1_SOLTU | 1.00E-28 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400002054} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01499 | 4465 | 6798 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001499s00040544.1 | PF04554.8 | Extensin_2 | 54 | 99 | 1.30E-05 |
| Glyur001499s00040544.1 | PF04554.8 | Extensin_2 | 67 | 111 | 7.00E-06 |
| Glyur001499s00040544.1 | PF04554.8 | Extensin_2 | 88 | 134 | 9.60E-06 |
| Glyur001499s00040544.1 | PF04554.8 | Extensin_2 | 113 | 166 | 8.40E-08 |
| Glyur001499s00040544.1 | PF04554.8 | Extensin_2 | 146 | 176 | 2.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 177.611 |
| SRR1783600 | control | 170.376 |
| SRR1783602 | moderate drought stress | 81.472 |
| SRR1811619 | moderate drought stress | 81.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.870 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.595 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.205 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.861 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.795 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 256.704 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 250.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 658.459 |
| SRR2868004 | Drought Stress (root) | 749.827 |
| SRR2967015 | Control (root) | 421.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 473.446 |
| SRR9715740 | Leaf | 178.769 |
| SRR9715741 | Leaf | 424.938 |
| SRR9715739 | Root | 86.925 |
| SRR9715742 | Root | 53.052 |
| SRR9715743 | Root | 49.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 66.943 |
| SRR8749028 | MeJA induced 9h | 335.354 |
| SRR8749029 | MeJA induced 9h | 77.636 |
| SRR8749030 | Uninduced | 319.549 |
| SRR8749031 | Uninduced | 267.628 |
| SRR8749032 | Uninduced | 116.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 578.033 |
| SRR8400027 | Control - Root | 556.282 |