Gene detail

Gene detail information of Glyur001495s00036177

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47560.1	5.00E-178	tonoplast dicarboxylate transporter
NR	XP_003610532.1	0	Tonoplast malate transporter/sodium dicarboxylate symporter [Medicago truncatula]
COG	YP_005847199.1	1.00E-92	di- and tricarboxylate transporter [Ignavibacterium album JCM 16511]
Swissprot	tr\|Q8LG88\|TDT_ARATH	0	Tonoplast dicarboxylate transporter
trEMBL	tr\|G7JLM6\|G7JLM6_MEDTR	0	Tonoplast dicarboxylate transporter-like protein {ECO:0000313\|EMBL:AES92729.1}

Sequence

Transcript Sequence

>Glyur001495s00036177.1
AGTTGTAATGTTTTTTTCTTCTTCTTTTATTTTTTATTAAAAAAGAAAAAGAAAAGGGAGAAGTAAAATTGGCCACTCCTTCCCGTCACTCACACGTGAAAATTCAGAAATAAAAGCCCAAGACTCAACCTTCATGCCTCCCCCCCTGCAATAGGCAATCATAGCCATTTTCGTTTGTGTCCAAAATGACAGGAGAACACAGTTCTGCGAAAATATCAGCTTCCGATGAGGCAAACCTCAACCTGAAGGCCCCACTTCTTCCAATCCAACGAACACAGAGCAATAGCATCCGCTTCACCTTCAAATCCTTTCTCACCCTCAAAAATTTCTATGTCATCCTCGGACCCTTGCTCTCCCTCTTCATATGCCTCTTCGTCAAACTCGACGCTCCCTCAAGCAGCCGTAACATGCTTGCCGTGATTGCCTGGGTCTTCAGTTGGTGGGTCACCACCGCCGTGCCACTTCCGGTGACCTCCATGTGTCCCCTGTTTCTGTTCCCCCTCTTTGGGATCTCCTCTGCTGACGCCGTCGCTCACTCTTACATGGACGACGTCATTACCCTCGTCTTGGGTAGTTTCATCCTCGCTCTCGCCGTTGAACGCTACAACGTCCACCGAAGATTGGCCTTGACCGTGACGTCGGTGTTTTGTGGCGAGCCACTGAACCCAGCGCTGCTGCTATTGGGCCTTTGTGCCACGTCATTCTTCGTAAGCATGTGGATGCACAACGTGGCAGCCGCGGTGATGTTGATGCCGGTGGCGACGGGGATCCTGCAGCGGCTGCCGGCGCCGCAGGAGCAATCGGAGGTGGTGAACAAGTTCAGCAGAGCGGTGGTCCTGACGGTGGTGTACGCGACGCCGATTGGGGGGATCAGCACCCTGACGGGGACAGGTGTCAACCTCATATTGGTGGGGATGTGGAAGAGCCTNGTCCCAGGGGCGAAGCCAATAAGCTTCAACACTTGGTTCTTCTTTGCTTTCCCTGTCGCGTTTATTTTCCTCATATCCTTCTGGTGCATCATCTGCTTGCTCTATCTCCGAAAGGGATCCGCTCCTGCTCTCTCTTCTTATCTGAGCAAAGCCCACTTGAAGAGGGACCTAGAAGCTCTCGGTCCCATGTCTTTTGCCGAGAAGATGGTGTTGTCTGTGTTTGGGTTGCTGATCATATTGTGGATGACAAGAAGAATCACAGATGACATTCCAGGATGGGGATCTTTCTTCCATGGCCTTGTTGGTGATGGAAGTGTCAGTGTTTTGGCGGCTGTATTATTGTTCATAATCCCAAACAAGAAACAAGAGGGGGAGAAGCTAATGGACTGGAATGAATGCAAGAAGTTNCCTTGGAACCTCATCTTGCTTCTAGGAGCTGGTTTTGCTTTAGCTGATGGAGTCCAATCTAGTGGCCTAGCAGATGTGCTTTCAAGGGCCTTAGATTTCTTGGAAGATGCACCATACTTGGCCATTGNTCCTGCAGTTAGTCTTATTAGTAGCATCATTACTGAGTTCATCACCTCCAATGATGCCACTGCCACACTCATTACCCCACTTCTATATCATATAGCCAGGACTATGCATGTGCACCCTCTTCTTCTTATGNTCCCTGGAGCAATTGCAACTGAATTTGCTTTCTTGCTTCCAACCTCAACCCCATCAAATGTAGTTGGATTTGCCACTGGTCATATTGAAATCCAAGATATGCTCAAAGTNGGTGTCCCACTTAAGATTGCTGGGATAGCTGTGCTCTCACTTCTCATGCCAACTCTGGGGGCTTATGTTTTTGGAACAAATGATGGTATTCAATGGATGCCAAACAAAAACTCTCCTTGNTTGCGAAATTGATTTAATTTCTTCNCCAAATTCCANGNTGCTTTANAAATTTTTGGTGTCATTTGTAATTGAAAATTTGACGCAACCTTCCTTCGCGCCTCGAAGATCAAAGCACACAGCAAAATGTATAGATGTTAATCGGCAAAGGAGGAGGGGATGGAAAATTGGAAATATATATATCTGTCTCTTTGTTTCTTGTATTTTCTCAGTCAGCCGGAGGAAGAGATGTTTATCAATTTCTATTGTAATCTTTTCTTCCGCCAATTATTGAAGGAAGAGTGAATTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01495	53387	58172	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006814 sodium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001495s00036177.1	PF00939.14	Na_sulph_symp	69	524	1.80E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.466
SRR1783600	control	3.511
SRR1783602	moderate drought stress	9.284
SRR1811619	moderate drought stress	9.215

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.712
DRR006520	Root Summer glycyrrhizin high producing strain	7.737
DRR006521	Root Winter glycyrrhizin high producing strain	46.475
DRR006522	Root Winter glycyrrhizin high producing strain	44.940
DRR006523	Root Summer glycyrrhizin low producing strain	11.457
DRR006524	Root Summer glycyrrhizin low producing strain	11.435
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.981
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.631

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.812
SRR2868004	Drought Stress (root)	123.995
SRR2967015	Control (root)	337.528

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.823
SRR9715740	Leaf	61.429
SRR9715741	Leaf	74.217
SRR9715739	Root	6.715
SRR9715742	Root	18.788
SRR9715743	Root	15.432

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.425
SRR8749028	MeJA induced 9h	4.948
SRR8749029	MeJA induced 9h	4.428
SRR8749030	Uninduced	12.174
SRR8749031	Uninduced	77.799
SRR8749032	Uninduced	36.475

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.631
SRR8400027	Control - Root	17.316