Gene detail

Gene detail information of Glyur001495s00036176

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G12560.2	8.00E-58	F-box and associated interaction domains-containing protein
NR	XP_004507627.1	0	PREDICTED: F-box protein CPR30-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	2.00E-66	F-box protein CPR30
trEMBL	tr\|G7JLM2\|G7JLM2_MEDTR	0	F-box and associated interaction domain protein {ECO:0000313\|EMBL:AES92725.1}

Sequence

Transcript Sequence

>Glyur001495s00036176.1
CGACGAGACAAACTATTGAAATTGAATCACGCGTAATTAGGCGAAACGATAATTTTGCAATTACAAGCCAACCATTTCGGTAGGTGAAGGGATATAATTTTGTAAAATGCAGGCACCAGGTAATACTTCAGCGGTTTGGTACTTTTCACCTTTTCTTTCTCGAATTCTCCGGAACAAAAAACCCTAACCTCAAAAAAAAAATTGCGGCGATGAGAATCTGCGAGTAAGCACTGTTGAATCCGTATCCGTTGGGCCTCATCGCCACCCACCGGAACCGATGGCNGATCTTCCGTCGGAAGTAATAACCGACATACTCTCACGCCTTCCAGTGAAGTCNCTCCTCCGCTTCCGCTGCACGTGCAAGTGGTGGCGCTCCGTCATCGACAGCACCCACTTCGTGTTCTCCCACCTCAACAAATCGATTGGCTCCAACATNATCCTCCGACGGCACTCCCGTCTCTACCACTTAGACCTGGATTCCCCAGACAAAGTGGTGGAGCTCAACCACCCCCTCATGTGTTACAGTAGCCGCATCAAGGTTCTTGGTTCCTGCAACGGCATCCTCTGTATTTGCAACATCGCAGACGACATCGCGTTTTGGAACCCTTTCATCNGCAAGCATCGGATTATCCCCTCGGAGCCTCTGCCCCGCAAAGAGAACAACGACGAAAACGCAAACACAAACACCCTCCTCGCCGCTCACGTTTGCGGATTCGGCTACGATTCATCCGCCGAGGACTATAAATTGGTAAGCATTTCGTATTTCGTCGATCTTCACAACCGAACCTTCGATCCACAGGTCAAGCTCTATAGTATGAGAATGGGTAGTTGGAAAAACCTTCCCAGCATGAATTACGCTCTGTGCTGCGCTAGGACAATGGGGGTTTTCGTTGGTGGTGCCTTGCACTGGGTCGTATCTCGGAGTCTTAAACCCGATGAGCCCGACTTGATCGTCGCGTTTGATCTTAGATCGGAGATTTTCCGGGAAGTGGCGNTGCCGGCGACGGTGGACGGGAAATTCGAAATTGATGTTGCTTTATTGGGAGGNTGCCTCTGCGTGATTGAGAATCGAGGGAATGAGGGGTTTGATGTTTGGGTCATGAGAGAGTATGGTTCACGAGGGCCGTGGTGTAAGGTGTTTTCGGTGGAACAACCGCGTGACGTGAAATCCATAAAATCTTTGAAGCCATTGGGTTACTCGAGGGATGGGGATAGGGTTCTGTTGGAACACGACCGTAGCAAGCTCTGTTGGTATAACCTCAAGANTGAGGATGAGGGTTTGAGTTGGGTTAGAATACCAGGAATGCCCAATTCAATTGAAGGAACCCCTTGTGTGGGAAGCCTTGTCCCACCNACTTTGCTGAGTCGAAAGGATGATAGCATGAAGCACAAACTAGGGGACGAAAAGACTNGGAAGAAAAGGGGTGACTTCCTGTCCAAGGGATTCAAATTAACGCTGGTTGAAGAGGAACGAAAGTGCTCTGAGTTGGCAATATTCAAGATCAAGAAAACGATGATTGAAAAATATTTGCCTTGGATAGATGATGCTTTCTTNATTATATTCGGTACCTTATATCCGCAAGGGTAAGTCTAGCAATTGATAGTAGGACTGCCCAAACAGACACCTCAATCCCCTCCCCCATAAGAGAAAATACGCCATCTCTCGTTTTGTTGTTATAAATTGAAAGNCTCCTCATACTGTTGAAACTTTTGGCTTCCTCATCTGGTGCTATGTTGTACAAGGCATTGTATATAAAACTCAAATANGGTTTTACTTGAATGGTTTGTCTCTCGGAAGAAAGCCATATCTGATTCAGAGGAAGCGCGTTTTTACTTTTTTGGTTGGAAAGACTCAACTGAGAAAGGATTAGAGACTGTGTTTTTCTGCTTAGAAGAGGGCAATGATATCATTTTCCAACTATTGAAGAGAAGTAAGTTGTTCACGGAGCCGGATCCTATTATAAGAGGCACGTTATTTACACTACACACAATCCATAATTTTTGTTTTATGATACTCGTTTTATATTTNCCGTTTTTCATTTTTGACGGGCGGTCTCTACCTGTGCAATTGTTTGGGTGGAGAGTAATATTTAGGTTAAGTGCTTTTTGGGATGATGATTTCTACTTTACATCACAATTTATTTCTACAGCGAGCTATGCCCATGGTGTGTACTTGGATGTGAATTCTGGTACTCAGGAAATGACACATCTAACGCAGTTATGTGATCAGAATTATTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01495	38421	41311	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001495s00036176.1	PF00646.28	F-box	2	41	5.50E-10
Glyur001495s00036176.1	PF07734.8	FBA_1	202	303	5.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.162
SRR1783600	control	8.625
SRR1783602	moderate drought stress	23.927
SRR1811619	moderate drought stress	23.737

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.985
DRR006520	Root Summer glycyrrhizin high producing strain	36.328
DRR006521	Root Winter glycyrrhizin high producing strain	72.064
DRR006522	Root Winter glycyrrhizin high producing strain	69.894
DRR006523	Root Summer glycyrrhizin low producing strain	37.737
DRR006524	Root Summer glycyrrhizin low producing strain	37.465
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.402
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.822

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.667
SRR2868004	Drought Stress (root)	27.166
SRR2967015	Control (root)	27.777

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.403
SRR9715740	Leaf	14.173
SRR9715741	Leaf	19.986
SRR9715739	Root	8.061
SRR9715742	Root	16.269
SRR9715743	Root	16.392

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.041
SRR8749028	MeJA induced 9h	34.667
SRR8749029	MeJA induced 9h	32.109
SRR8749030	Uninduced	28.277
SRR8749031	Uninduced	33.839
SRR8749032	Uninduced	34.522

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.561
SRR8400027	Control - Root	38.419