Gene detail information of Glyur001495s00036168.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22360.1 | 2.00E-10 | SWIB complex BAF60b domain-containing protein |
| NR | XP_003529660.1 | 5.83E-20 | PREDICTED: uncharacterized protein LOC100788173 [Glycine max] |
| trEMBL | tr|I1KNI9|I1KNI9_SOYBN | 2.00E-20 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G39530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01495 | 93 | 227 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-BAF60b |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001495s00036168.1 | PF02201.13 | SWIB | 1 | 36 | 1.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.856 |
| SRR1783600 | control | 28.565 |
| SRR1783602 | moderate drought stress | 36.523 |
| SRR1811619 | moderate drought stress | 34.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.054 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.500 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.094 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.422 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.900 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.256 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.021 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.075 |
| SRR2868004 | Drought Stress (root) | 34.869 |
| SRR2967015 | Control (root) | 35.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.746 |
| SRR9715740 | Leaf | 15.110 |
| SRR9715741 | Leaf | 13.748 |
| SRR9715739 | Root | 14.938 |
| SRR9715742 | Root | 14.118 |
| SRR9715743 | Root | 12.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.827 |
| SRR8749028 | MeJA induced 9h | 7.649 |
| SRR8749029 | MeJA induced 9h | 10.765 |
| SRR8749030 | Uninduced | 7.929 |
| SRR8749031 | Uninduced | 7.259 |
| SRR8749032 | Uninduced | 7.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.595 |
| SRR8400027 | Control - Root | 19.839 |